Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 TTTY23B-201ENST00000442790 549 ntBASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 NOP2-220ENST00000545915 630 ntTSL 2 BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CTDP1Q9Y5B0 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 EEF1DP4-201ENST00000446006 880 ntBASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 TMEM261P1-201ENST00000604899 340 ntBASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CTDP1Q9Y5B0 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 AC098850.1-201ENST00000419919 790 ntBASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 U91328.1-201ENST00000437528 223 ntBASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 RN7SL837P-201ENST00000463010 287 ntBASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 AL033527.5-201ENST00000641382 801 ntBASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 AC011676.5-201ENST00000624864 2660 ntBASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CTDP1Q9Y5B0 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms