Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 FO393414.2-201ENST00000405153 598 ntBASIC17.05■□□□□ 0.32
SIX2Q9NPC8 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 MTND6P24-201ENST00000440466 518 ntBASIC17.05■□□□□ 0.32
SIX2Q9NPC8 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 PTK7-212ENST00000476760 902 ntTSL 2 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 AL079307.3-201ENST00000556114 283 ntBASIC17.05■□□□□ 0.32
SIX2Q9NPC8 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 AC011270.2-201ENST00000624293 2550 ntBASIC17.05■□□□□ 0.32
SIX2Q9NPC8 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
SIX2Q9NPC8 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 AL035456.1-201ENST00000456064 1369 ntBASIC17.04■□□□□ 0.32
SIX2Q9NPC8 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 GRN-214ENST00000589265 1632 ntTSL 5 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 AL139400.1-201ENST00000366220 510 ntBASIC17.04■□□□□ 0.32
SIX2Q9NPC8 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 AC074338.1-201ENST00000416825 156 ntBASIC17.04■□□□□ 0.32
SIX2Q9NPC8 AL080243.2-201ENST00000418783 582 ntBASIC17.04■□□□□ 0.32
SIX2Q9NPC8 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 TARDBPP1-201ENST00000442013 1203 ntBASIC17.04■□□□□ 0.32
SIX2Q9NPC8 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 HADH-212ENST00000638621 741 ntTSL 5 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 CASK-202ENST00000378158 3848 ntTSL 5 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SIX2Q9NPC8 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC17.04■□□□□ 0.32
SIX2Q9NPC8 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 AC004967.1-201ENST00000453589 447 ntBASIC17.03■□□□□ 0.32
SIX2Q9NPC8 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 AC109322.1-201ENST00000524499 1264 ntBASIC17.03■□□□□ 0.32
SIX2Q9NPC8 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 MECR-202ENST00000373791 2416 ntTSL 2 BASIC17.03■□□□□ 0.32
SIX2Q9NPC8 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms