Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TPRX2P-201ENST00000535362 881 ntBASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 AC023310.3-201ENST00000557027 670 ntBASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 AC243562.2-201ENST00000561247 970 ntBASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 LINC01922-201ENST00000562582 719 ntBASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 AC100756.1-201ENST00000562736 682 ntBASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 AC138749.3-201ENST00000567691 622 ntBASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 AC116165.1-201ENST00000611806 668 ntBASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.46■□□□□ 0.39
TRAIPQ9BWF2 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
TRAIPQ9BWF2 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
TRAIPQ9BWF2 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
TRAIPQ9BWF2 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 ME2P1-201ENST00000426028 1970 ntBASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 KRT17P7-201ENST00000451704 1104 ntBASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 AL589987.1-201ENST00000453380 819 ntBASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAIPQ9BWF2 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms