Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 AL162426.1-201ENST00000624141 743 ntBASIC15.78■□□□□ 0.12
TTC28Q96AY4 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TTC28Q96AY4 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
TTC28Q96AY4 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TTC28Q96AY4 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TTC28Q96AY4 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
TTC28Q96AY4 AC026320.2-201ENST00000434379 478 ntBASIC15.77■□□□□ 0.12
TTC28Q96AY4 RCC2P8-201ENST00000502779 1035 ntBASIC15.77■□□□□ 0.12
TTC28Q96AY4 AL391280.1-201ENST00000506969 1062 ntBASIC15.77■□□□□ 0.12
TTC28Q96AY4 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC15.77■□□□□ 0.12
TTC28Q96AY4 RN7SL163P-201ENST00000583100 276 ntBASIC15.77■□□□□ 0.12
TTC28Q96AY4 AP005212.2-201ENST00000584979 510 ntBASIC15.77■□□□□ 0.12
TTC28Q96AY4 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
TTC28Q96AY4 AC009955.4-201ENST00000597192 544 ntBASIC15.77■□□□□ 0.12
TTC28Q96AY4 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
TTC28Q96AY4 AL645728.1-201ENST00000366221 2101 ntBASIC15.77■□□□□ 0.12
TTC28Q96AY4 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
TTC28Q96AY4 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.77■□□□□ 0.12
TTC28Q96AY4 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
TTC28Q96AY4 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TTC28Q96AY4 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TTC28Q96AY4 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
TTC28Q96AY4 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.77■□□□□ 0.11
TTC28Q96AY4 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TTC28Q96AY4 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.77■□□□□ 0.11
TTC28Q96AY4 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TTC28Q96AY4 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.77■□□□□ 0.11
TTC28Q96AY4 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC15.77■□□□□ 0.11
TTC28Q96AY4 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
TTC28Q96AY4 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC15.77■□□□□ 0.11
TTC28Q96AY4 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC15.77■□□□□ 0.11
TTC28Q96AY4 NUDT4P2-201ENST00000578341 546 ntBASIC15.77■□□□□ 0.11
TTC28Q96AY4 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
TTC28Q96AY4 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC15.77■□□□□ 0.11
TTC28Q96AY4 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.77■□□□□ 0.11
TTC28Q96AY4 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
TTC28Q96AY4 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
TTC28Q96AY4 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TTC28Q96AY4 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC15.77■□□□□ 0.11
TTC28Q96AY4 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.11
TTC28Q96AY4 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
TTC28Q96AY4 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TTC28Q96AY4 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TTC28Q96AY4 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TTC28Q96AY4 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TTC28Q96AY4 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TTC28Q96AY4 AC023141.7-201ENST00000430646 407 ntBASIC15.76■□□□□ 0.11
TTC28Q96AY4 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC15.76■□□□□ 0.11
TTC28Q96AY4 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
TTC28Q96AY4 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC15.76■□□□□ 0.11
TTC28Q96AY4 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TTC28Q96AY4 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC15.76■□□□□ 0.11
TTC28Q96AY4 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.76■□□□□ 0.11
TTC28Q96AY4 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TTC28Q96AY4 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TTC28Q96AY4 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.76■□□□□ 0.11
TTC28Q96AY4 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TTC28Q96AY4 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.76■□□□□ 0.11
TTC28Q96AY4 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TTC28Q96AY4 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TTC28Q96AY4 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
TTC28Q96AY4 AL627422.1-201ENST00000434104 580 ntBASIC15.76■□□□□ 0.11
TTC28Q96AY4 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC15.76■□□□□ 0.11
TTC28Q96AY4 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC15.76■□□□□ 0.11
TTC28Q96AY4 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TTC28Q96AY4 MIR4783-201ENST00000580343 82 ntBASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms