Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC13.7□□□□□ -0.22
ABCA4P78363 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.7□□□□□ -0.22
ABCA4P78363 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
ABCA4P78363 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC13.7□□□□□ -0.22
ABCA4P78363 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
ABCA4P78363 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
ABCA4P78363 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC13.7□□□□□ -0.22
ABCA4P78363 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC13.7□□□□□ -0.22
ABCA4P78363 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.7□□□□□ -0.22
ABCA4P78363 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
ABCA4P78363 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC13.7□□□□□ -0.22
ABCA4P78363 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC13.7□□□□□ -0.22
ABCA4P78363 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC13.7□□□□□ -0.22
ABCA4P78363 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
ABCA4P78363 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC13.7□□□□□ -0.22
ABCA4P78363 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.7□□□□□ -0.22
ABCA4P78363 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.7□□□□□ -0.22
ABCA4P78363 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 CROCCP4-201ENST00000457096 498 ntBASIC13.7□□□□□ -0.22
ABCA4P78363 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC13.7□□□□□ -0.22
ABCA4P78363 ZNF767P-206ENST00000513792 565 ntBASIC13.7□□□□□ -0.22
ABCA4P78363 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 COG4-212ENST00000564653 590 ntTSL 5 BASIC13.7□□□□□ -0.22
ABCA4P78363 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC13.7□□□□□ -0.22
ABCA4P78363 PAM16-215ENST00000577031 548 ntTSL 4 BASIC13.7□□□□□ -0.22
ABCA4P78363 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA4P78363 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
ABCA4P78363 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC13.69□□□□□ -0.22
ABCA4P78363 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC13.69□□□□□ -0.22
ABCA4P78363 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
ABCA4P78363 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
ABCA4P78363 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
ABCA4P78363 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC13.69□□□□□ -0.22
ABCA4P78363 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC13.69□□□□□ -0.22
ABCA4P78363 AC108725.1-201ENST00000495472 409 ntBASIC13.69□□□□□ -0.22
ABCA4P78363 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC13.69□□□□□ -0.22
ABCA4P78363 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.69□□□□□ -0.22
ABCA4P78363 AL158212.4-201ENST00000624062 1286 ntBASIC13.69□□□□□ -0.22
ABCA4P78363 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
ABCA4P78363 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC13.69□□□□□ -0.22
ABCA4P78363 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
ABCA4P78363 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
ABCA4P78363 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
ABCA4P78363 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.69□□□□□ -0.22
ABCA4P78363 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
ABCA4P78363 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 AC078925.2-201ENST00000624013 1973 ntBASIC13.69□□□□□ -0.22
ABCA4P78363 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 AC093433.1-201ENST00000458048 571 ntBASIC13.69□□□□□ -0.22
ABCA4P78363 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 RN7SL190P-201ENST00000582519 257 ntBASIC13.69□□□□□ -0.22
ABCA4P78363 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
ABCA4P78363 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC13.69□□□□□ -0.22
ABCA4P78363 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC13.69□□□□□ -0.22
ABCA4P78363 VILL-207ENST00000465644 1857 ntTSL 5 BASIC13.69□□□□□ -0.22
ABCA4P78363 GRN-214ENST00000589265 1632 ntTSL 5 BASIC13.68□□□□□ -0.22
ABCA4P78363 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC13.68□□□□□ -0.22
ABCA4P78363 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
ABCA4P78363 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC13.68□□□□□ -0.22
ABCA4P78363 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ABCA4P78363 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC13.68□□□□□ -0.22
ABCA4P78363 BNIP3P1-202ENST00000550043 1585 ntBASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms