Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
TPM4P67936 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
TPM4P67936 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
TPM4P67936 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
TPM4P67936 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC17.95■□□□□ 0.46
TPM4P67936 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC17.95■□□□□ 0.46
TPM4P67936 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TPM4P67936 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.95■□□□□ 0.46
TPM4P67936 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
TPM4P67936 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
TPM4P67936 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC17.94■□□□□ 0.46
TPM4P67936 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
TPM4P67936 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 AC105250.1-201ENST00000509378 2057 ntBASIC17.94■□□□□ 0.46
TPM4P67936 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.94■□□□□ 0.46
TPM4P67936 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.94■□□□□ 0.46
TPM4P67936 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC17.94■□□□□ 0.46
TPM4P67936 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.94■□□□□ 0.46
TPM4P67936 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.94■□□□□ 0.46
TPM4P67936 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.94■□□□□ 0.46
TPM4P67936 HMGA1P7-201ENST00000406908 502 ntBASIC17.94■□□□□ 0.46
TPM4P67936 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.94■□□□□ 0.46
TPM4P67936 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.94■□□□□ 0.46
TPM4P67936 FAM185BP-201ENST00000443595 716 ntBASIC17.94■□□□□ 0.46
TPM4P67936 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
TPM4P67936 SAPCD2P3-201ENST00000455031 850 ntBASIC17.94■□□□□ 0.46
TPM4P67936 KRT18P34-201ENST00000488218 1270 ntBASIC17.94■□□□□ 0.46
TPM4P67936 AC073648.2-201ENST00000510116 352 ntBASIC17.94■□□□□ 0.46
TPM4P67936 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.94■□□□□ 0.46
TPM4P67936 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
TPM4P67936 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 AC090616.6-203ENST00000579186 1945 ntBASIC17.94■□□□□ 0.46
TPM4P67936 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
TPM4P67936 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TPM4P67936 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
TPM4P67936 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
TPM4P67936 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.93■□□□□ 0.46
TPM4P67936 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.93■□□□□ 0.46
TPM4P67936 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
TPM4P67936 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC17.93■□□□□ 0.46
TPM4P67936 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.93■□□□□ 0.46
TPM4P67936 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.93■□□□□ 0.46
TPM4P67936 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.93■□□□□ 0.46
TPM4P67936 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.93■□□□□ 0.46
TPM4P67936 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.93■□□□□ 0.46
TPM4P67936 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.93■□□□□ 0.46
TPM4P67936 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.93■□□□□ 0.46
TPM4P67936 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.93■□□□□ 0.46
TPM4P67936 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.93■□□□□ 0.46
TPM4P67936 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.93■□□□□ 0.46
TPM4P67936 ACTL9-202ENST00000612068 1252 ntBASIC17.93■□□□□ 0.46
TPM4P67936 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
TPM4P67936 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.93■□□□□ 0.46
TPM4P67936 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.93■□□□□ 0.46
TPM4P67936 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.93■□□□□ 0.46
TPM4P67936 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
TPM4P67936 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
TPM4P67936 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
TPM4P67936 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TPM4P67936 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
TPM4P67936 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TPM4P67936 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC17.92■□□□□ 0.46
TPM4P67936 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TPM4P67936 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms