Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SRP54P61011 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SRP54P61011 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SRP54P61011 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SRP54P61011 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SRP54P61011 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.75■□□□□ 0.11
SRP54P61011 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SRP54P61011 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.75■□□□□ 0.11
SRP54P61011 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SRP54P61011 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.75■□□□□ 0.11
SRP54P61011 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.75■□□□□ 0.11
SRP54P61011 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
SRP54P61011 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
SRP54P61011 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SRP54P61011 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SRP54P61011 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.75■□□□□ 0.11
SRP54P61011 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.75■□□□□ 0.11
SRP54P61011 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SRP54P61011 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
SRP54P61011 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.75■□□□□ 0.11
SRP54P61011 NME2P1-201ENST00000426182 414 ntBASIC15.75■□□□□ 0.11
SRP54P61011 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.75■□□□□ 0.11
SRP54P61011 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SRP54P61011 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.75■□□□□ 0.11
SRP54P61011 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SRP54P61011 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.75■□□□□ 0.11
SRP54P61011 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.75■□□□□ 0.11
SRP54P61011 TPRX2P-201ENST00000535362 881 ntBASIC15.75■□□□□ 0.11
SRP54P61011 CR383656.12-201ENST00000549567 513 ntBASIC15.75■□□□□ 0.11
SRP54P61011 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SRP54P61011 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.75■□□□□ 0.11
SRP54P61011 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.75■□□□□ 0.11
SRP54P61011 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.75■□□□□ 0.11
SRP54P61011 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.75■□□□□ 0.11
SRP54P61011 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.75■□□□□ 0.11
SRP54P61011 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SRP54P61011 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.75■□□□□ 0.11
SRP54P61011 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.75■□□□□ 0.11
SRP54P61011 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SRP54P61011 KRT8P37-201ENST00000451609 1420 ntBASIC15.75■□□□□ 0.11
SRP54P61011 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.75■□□□□ 0.11
SRP54P61011 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SRP54P61011 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SRP54P61011 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SRP54P61011 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
SRP54P61011 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
SRP54P61011 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SRP54P61011 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
SRP54P61011 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.74■□□□□ 0.11
SRP54P61011 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
SRP54P61011 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
SRP54P61011 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.74■□□□□ 0.11
SRP54P61011 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SRP54P61011 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.74■□□□□ 0.11
SRP54P61011 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.74■□□□□ 0.11
SRP54P61011 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SRP54P61011 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
SRP54P61011 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
SRP54P61011 MEP1AP4-201ENST00000423244 1087 ntBASIC15.74■□□□□ 0.11
SRP54P61011 AL589987.1-201ENST00000453380 819 ntBASIC15.74■□□□□ 0.11
SRP54P61011 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.74■□□□□ 0.11
SRP54P61011 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.74■□□□□ 0.11
SRP54P61011 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.74■□□□□ 0.11
SRP54P61011 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.74■□□□□ 0.11
SRP54P61011 TIMM17BP1-201ENST00000545713 516 ntBASIC15.74■□□□□ 0.11
SRP54P61011 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.74■□□□□ 0.11
SRP54P61011 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.74■□□□□ 0.11
SRP54P61011 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.74■□□□□ 0.11
SRP54P61011 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.74■□□□□ 0.11
SRP54P61011 CHCHD2P3-201ENST00000603038 451 ntBASIC15.74■□□□□ 0.11
SRP54P61011 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.74■□□□□ 0.11
SRP54P61011 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.74■□□□□ 0.11
SRP54P61011 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.74■□□□□ 0.11
SRP54P61011 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
SRP54P61011 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
SRP54P61011 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SRP54P61011 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
SRP54P61011 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.74■□□□□ 0.11
SRP54P61011 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SRP54P61011 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.74■□□□□ 0.11
SRP54P61011 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms