Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.3■□□□□ 0.04
MSX2P35548 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 AC079781.5-202ENST00000641784 3743 ntBASIC15.3■□□□□ 0.04
MSX2P35548 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
MSX2P35548 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
MSX2P35548 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
MSX2P35548 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.29■□□□□ 0.04
MSX2P35548 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 LINC01230-201ENST00000625222 3017 ntBASIC15.29■□□□□ 0.04
MSX2P35548 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.29■□□□□ 0.04
MSX2P35548 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
MSX2P35548 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.29■□□□□ 0.04
MSX2P35548 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
MSX2P35548 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC15.29■□□□□ 0.04
MSX2P35548 TMPOP1-202ENST00000424642 1267 ntBASIC15.29■□□□□ 0.04
MSX2P35548 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC15.29■□□□□ 0.04
MSX2P35548 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.29■□□□□ 0.04
MSX2P35548 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 CYGB-205ENST00000590175 830 ntTSL 3 BASIC15.29■□□□□ 0.04
MSX2P35548 AC092119.3-201ENST00000612618 583 ntBASIC15.29■□□□□ 0.04
MSX2P35548 BCL10-202ENST00000620248 774 ntTSL 5 BASIC15.29■□□□□ 0.04
MSX2P35548 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 AC018892.3-201ENST00000623986 2499 ntBASIC15.29■□□□□ 0.04
MSX2P35548 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.29■□□□□ 0.04
MSX2P35548 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
MSX2P35548 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.29■□□□□ 0.04
MSX2P35548 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.29■□□□□ 0.04
MSX2P35548 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC15.29■□□□□ 0.04
MSX2P35548 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 AL390755.1-201ENST00000623716 2027 ntBASIC15.29■□□□□ 0.04
MSX2P35548 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.29■□□□□ 0.04
MSX2P35548 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.29■□□□□ 0.04
MSX2P35548 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.29■□□□□ 0.04
MSX2P35548 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
MSX2P35548 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.29■□□□□ 0.04
MSX2P35548 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.29■□□□□ 0.04
MSX2P35548 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.29■□□□□ 0.04
MSX2P35548 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
MSX2P35548 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MSX2P35548 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSX2P35548 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
MSX2P35548 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
MSX2P35548 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSX2P35548 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSX2P35548 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.28■□□□□ 0.04
MSX2P35548 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSX2P35548 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSX2P35548 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.28■□□□□ 0.04
MSX2P35548 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.28■□□□□ 0.04
MSX2P35548 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSX2P35548 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.28■□□□□ 0.04
MSX2P35548 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MSX2P35548 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.28■□□□□ 0.04
MSX2P35548 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
MSX2P35548 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.28■□□□□ 0.04
MSX2P35548 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.28■□□□□ 0.04
MSX2P35548 NPAP1P7-201ENST00000613027 823 ntBASIC15.28■□□□□ 0.04
MSX2P35548 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.28■□□□□ 0.04
MSX2P35548 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC15.28■□□□□ 0.04
MSX2P35548 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSX2P35548 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
MSX2P35548 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
MSX2P35548 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
MSX2P35548 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
MSX2P35548 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSX2P35548 MYO15B-237ENST00000642007 4893 ntBASIC15.28■□□□□ 0.04
MSX2P35548 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSX2P35548 ABR-228ENST00000574437 3196 ntTSL 5 BASIC15.28■□□□□ 0.04
MSX2P35548 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSX2P35548 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.28■□□□□ 0.04
MSX2P35548 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms