Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC13.9□□□□□ -0.18
COL8A1P27658 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13.9□□□□□ -0.18
COL8A1P27658 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC13.9□□□□□ -0.18
COL8A1P27658 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
COL8A1P27658 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
COL8A1P27658 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC13.9□□□□□ -0.18
COL8A1P27658 AL645608.8-201ENST00000606034 2086 ntBASIC13.9□□□□□ -0.18
COL8A1P27658 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC13.9□□□□□ -0.18
COL8A1P27658 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
COL8A1P27658 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC13.9□□□□□ -0.18
COL8A1P27658 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL8A1P27658 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC13.9□□□□□ -0.18
COL8A1P27658 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
COL8A1P27658 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
COL8A1P27658 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC13.89□□□□□ -0.19
COL8A1P27658 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC13.89□□□□□ -0.19
COL8A1P27658 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC13.89□□□□□ -0.19
COL8A1P27658 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC13.89□□□□□ -0.19
COL8A1P27658 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
COL8A1P27658 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC13.89□□□□□ -0.19
COL8A1P27658 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC13.89□□□□□ -0.19
COL8A1P27658 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC13.89□□□□□ -0.19
COL8A1P27658 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC13.89□□□□□ -0.19
COL8A1P27658 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC13.89□□□□□ -0.19
COL8A1P27658 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC13.89□□□□□ -0.19
COL8A1P27658 TSACC-208ENST00000481479 741 ntTSL 2 BASIC13.89□□□□□ -0.19
COL8A1P27658 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC13.89□□□□□ -0.19
COL8A1P27658 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 AC023310.1-201ENST00000554836 735 ntBASIC13.89□□□□□ -0.19
COL8A1P27658 AKR1B10P2-201ENST00000577332 927 ntBASIC13.89□□□□□ -0.19
COL8A1P27658 AC104982.3-201ENST00000581995 514 ntBASIC13.89□□□□□ -0.19
COL8A1P27658 NAT9-222ENST00000583476 583 ntTSL 3 BASIC13.89□□□□□ -0.19
COL8A1P27658 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC13.89□□□□□ -0.19
COL8A1P27658 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
COL8A1P27658 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC13.89□□□□□ -0.19
COL8A1P27658 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC13.89□□□□□ -0.19
COL8A1P27658 AC097724.1-201ENST00000609581 426 ntBASIC13.89□□□□□ -0.19
COL8A1P27658 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC13.89□□□□□ -0.19
COL8A1P27658 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC13.89□□□□□ -0.19
COL8A1P27658 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
COL8A1P27658 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC13.89□□□□□ -0.19
COL8A1P27658 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.89□□□□□ -0.19
COL8A1P27658 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 AC006277.1-201ENST00000624348 1610 ntBASIC13.89□□□□□ -0.19
COL8A1P27658 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 AHCYP2-201ENST00000430630 1300 ntBASIC13.89□□□□□ -0.19
COL8A1P27658 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL8A1P27658 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC13.88□□□□□ -0.19
COL8A1P27658 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC13.88□□□□□ -0.19
COL8A1P27658 INTS4P2-202ENST00000614726 2019 ntBASIC13.88□□□□□ -0.19
COL8A1P27658 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
COL8A1P27658 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
COL8A1P27658 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC13.88□□□□□ -0.19
COL8A1P27658 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC13.88□□□□□ -0.19
COL8A1P27658 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
COL8A1P27658 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL8A1P27658 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms