Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A3P12111 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC16.17■□□□□ 0.18
COL6A3P12111 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC16.17■□□□□ 0.18
COL6A3P12111 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL6A3P12111 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A3P12111 RPS5-204ENST00000598098 536 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A3P12111 AC005041.3-201ENST00000606287 649 ntBASIC16.17■□□□□ 0.18
COL6A3P12111 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A3P12111 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A3P12111 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A3P12111 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
COL6A3P12111 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 AL627422.1-201ENST00000434104 580 ntBASIC16.16■□□□□ 0.18
COL6A3P12111 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
COL6A3P12111 AL162426.1-201ENST00000624141 743 ntBASIC16.16■□□□□ 0.18
COL6A3P12111 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.16■□□□□ 0.18
COL6A3P12111 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.16■□□□□ 0.18
COL6A3P12111 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 AC087289.5-201ENST00000586076 3175 ntBASIC16.16■□□□□ 0.18
COL6A3P12111 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
COL6A3P12111 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.16■□□□□ 0.18
COL6A3P12111 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
COL6A3P12111 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
COL6A3P12111 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC16.16■□□□□ 0.18
COL6A3P12111 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC16.16■□□□□ 0.18
COL6A3P12111 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC16.16■□□□□ 0.18
COL6A3P12111 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC16.16■□□□□ 0.18
COL6A3P12111 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC16.16■□□□□ 0.18
COL6A3P12111 HMGB1P24-201ENST00000611897 328 ntBASIC16.16■□□□□ 0.18
COL6A3P12111 ENPP7P14-201ENST00000621765 1040 ntBASIC16.16■□□□□ 0.18
COL6A3P12111 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.16■□□□□ 0.18
COL6A3P12111 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.16■□□□□ 0.18
COL6A3P12111 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
COL6A3P12111 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 KRT17P5-201ENST00000332088 839 ntBASIC16.16■□□□□ 0.18
COL6A3P12111 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
COL6A3P12111 KLF2P2-201ENST00000416807 1039 ntBASIC16.16■□□□□ 0.18
COL6A3P12111 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.16■□□□□ 0.18
COL6A3P12111 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC16.16■□□□□ 0.18
COL6A3P12111 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC16.16■□□□□ 0.18
COL6A3P12111 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC16.16■□□□□ 0.18
COL6A3P12111 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC16.16■□□□□ 0.18
COL6A3P12111 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A3P12111 AL138799.1-201ENST00000448213 1675 ntBASIC16.16■□□□□ 0.18
COL6A3P12111 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
COL6A3P12111 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A3P12111 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A3P12111 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A3P12111 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC16.15■□□□□ 0.18
COL6A3P12111 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.15■□□□□ 0.18
COL6A3P12111 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A3P12111 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
COL6A3P12111 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
COL6A3P12111 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC16.15■□□□□ 0.18
COL6A3P12111 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A3P12111 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC16.15■□□□□ 0.18
COL6A3P12111 AC009779.1-201ENST00000551138 283 ntBASIC16.15■□□□□ 0.18
COL6A3P12111 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC16.15■□□□□ 0.18
COL6A3P12111 NAMA-206ENST00000605377 509 ntTSL 5 BASIC16.15■□□□□ 0.18
COL6A3P12111 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.15■□□□□ 0.18
COL6A3P12111 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A3P12111 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A3P12111 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
COL6A3P12111 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A3P12111 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A3P12111 CR383656.3-201ENST00000551315 183 ntBASIC16.15■□□□□ 0.18
COL6A3P12111 MBP-238ENST00000580402 915 ntTSL 5 BASIC16.15■□□□□ 0.18
COL6A3P12111 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC16.15■□□□□ 0.18
COL6A3P12111 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC16.15■□□□□ 0.18
COL6A3P12111 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC16.15■□□□□ 0.18
COL6A3P12111 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.15■□□□□ 0.18
COL6A3P12111 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A3P12111 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC16.15■□□□□ 0.18
COL6A3P12111 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A3P12111 AC015909.3-201ENST00000572855 1794 ntBASIC16.14■□□□□ 0.18
COL6A3P12111 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
COL6A3P12111 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
COL6A3P12111 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
COL6A3P12111 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
COL6A3P12111 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A3P12111 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC16.14■□□□□ 0.17
COL6A3P12111 AC008723.1-201ENST00000506922 207 ntBASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms