Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
CXCL1P09341 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
CXCL1P09341 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC12.43□□□□□ -0.42
CXCL1P09341 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
CXCL1P09341 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC12.43□□□□□ -0.42
CXCL1P09341 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
CXCL1P09341 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
CXCL1P09341 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 AC113347.1-201ENST00000413321 391 ntBASIC12.43□□□□□ -0.42
CXCL1P09341 AL845331.1-201ENST00000424978 1190 ntBASIC12.43□□□□□ -0.42
CXCL1P09341 AC117947.1-201ENST00000427448 529 ntBASIC12.43□□□□□ -0.42
CXCL1P09341 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC12.43□□□□□ -0.42
CXCL1P09341 SIGLEC30P-201ENST00000455569 941 ntBASIC12.43□□□□□ -0.42
CXCL1P09341 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC12.43□□□□□ -0.42
CXCL1P09341 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC12.43□□□□□ -0.42
CXCL1P09341 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
CXCL1P09341 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
CXCL1P09341 AC124864.1-201ENST00000623408 392 ntBASIC12.43□□□□□ -0.42
CXCL1P09341 PGM5P2-202ENST00000637225 1043 ntBASIC12.43□□□□□ -0.42
CXCL1P09341 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
CXCL1P09341 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
CXCL1P09341 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
CXCL1P09341 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
CXCL1P09341 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
CXCL1P09341 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CXCL1P09341 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC12.43□□□□□ -0.42
CXCL1P09341 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
CXCL1P09341 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC12.42□□□□□ -0.42
CXCL1P09341 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 INVS-201ENST00000262456 2968 ntTSL 5 BASIC12.42□□□□□ -0.42
CXCL1P09341 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC12.42□□□□□ -0.42
CXCL1P09341 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC12.42□□□□□ -0.42
CXCL1P09341 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC12.42□□□□□ -0.42
CXCL1P09341 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC12.42□□□□□ -0.42
CXCL1P09341 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC12.42□□□□□ -0.42
CXCL1P09341 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
CXCL1P09341 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC12.42□□□□□ -0.42
CXCL1P09341 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
CXCL1P09341 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC12.42□□□□□ -0.42
CXCL1P09341 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
CXCL1P09341 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC12.42□□□□□ -0.42
CXCL1P09341 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC12.42□□□□□ -0.42
CXCL1P09341 COX5A-202ENST00000562233 441 ntTSL 3 BASIC12.42□□□□□ -0.42
CXCL1P09341 COX5A-204ENST00000567270 579 ntTSL 3 BASIC12.42□□□□□ -0.42
CXCL1P09341 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC12.42□□□□□ -0.42
CXCL1P09341 ABBA01031661.1-201ENST00000634362 1253 ntBASIC12.42□□□□□ -0.42
CXCL1P09341 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC12.42□□□□□ -0.42
CXCL1P09341 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC12.42□□□□□ -0.42
CXCL1P09341 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC12.42□□□□□ -0.42
CXCL1P09341 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
CXCL1P09341 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC12.42□□□□□ -0.42
CXCL1P09341 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC12.42□□□□□ -0.42
CXCL1P09341 LINC01144-201ENST00000626198 1710 ntBASIC12.42□□□□□ -0.42
CXCL1P09341 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC12.42□□□□□ -0.42
CXCL1P09341 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
CXCL1P09341 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
CXCL1P09341 SLC6A6P1-201ENST00000413933 1850 ntBASIC12.42□□□□□ -0.42
CXCL1P09341 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC12.42□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms