Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.75■□□□□ 0.27
APOEP02649 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
APOEP02649 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.75■□□□□ 0.27
APOEP02649 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.75■□□□□ 0.27
APOEP02649 HAUS4P1-201ENST00000406739 1145 ntBASIC16.75■□□□□ 0.27
APOEP02649 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
APOEP02649 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.75■□□□□ 0.27
APOEP02649 HLA-V-204ENST00000476601 1289 ntBASIC16.75■□□□□ 0.27
APOEP02649 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.75■□□□□ 0.27
APOEP02649 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.75■□□□□ 0.27
APOEP02649 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.75■□□□□ 0.27
APOEP02649 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.75■□□□□ 0.27
APOEP02649 AL355385.1-201ENST00000606123 409 ntBASIC16.75■□□□□ 0.27
APOEP02649 SPDYE12P-201ENST00000618416 771 ntBASIC16.75■□□□□ 0.27
APOEP02649 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.75■□□□□ 0.27
APOEP02649 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
APOEP02649 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
APOEP02649 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.75■□□□□ 0.27
APOEP02649 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.75■□□□□ 0.27
APOEP02649 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
APOEP02649 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.75■□□□□ 0.27
APOEP02649 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.75■□□□□ 0.27
APOEP02649 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.75■□□□□ 0.27
APOEP02649 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
APOEP02649 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
APOEP02649 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
APOEP02649 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
APOEP02649 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
APOEP02649 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 MIR648-201ENST00000385046 94 ntBASIC16.74■□□□□ 0.27
APOEP02649 MIR770-201ENST00000390219 98 ntBASIC16.74■□□□□ 0.27
APOEP02649 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.74■□□□□ 0.27
APOEP02649 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 AC055876.3-201ENST00000431496 288 ntBASIC16.74■□□□□ 0.27
APOEP02649 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.74■□□□□ 0.27
APOEP02649 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
APOEP02649 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.74■□□□□ 0.27
APOEP02649 AC027369.6-201ENST00000525520 931 ntBASIC16.74■□□□□ 0.27
APOEP02649 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.74■□□□□ 0.27
APOEP02649 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.74■□□□□ 0.27
APOEP02649 AC243562.2-201ENST00000561247 970 ntBASIC16.74■□□□□ 0.27
APOEP02649 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.74■□□□□ 0.27
APOEP02649 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.74■□□□□ 0.27
APOEP02649 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.74■□□□□ 0.27
APOEP02649 AC138649.4-201ENST00000612222 287 ntBASIC16.74■□□□□ 0.27
APOEP02649 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
APOEP02649 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.74■□□□□ 0.27
APOEP02649 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 TSPY26P-202ENST00000565928 3884 ntBASIC16.74■□□□□ 0.27
APOEP02649 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.74■□□□□ 0.27
APOEP02649 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.74■□□□□ 0.27
APOEP02649 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.74■□□□□ 0.27
APOEP02649 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.74■□□□□ 0.27
APOEP02649 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
APOEP02649 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.73■□□□□ 0.27
APOEP02649 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
APOEP02649 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
APOEP02649 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
APOEP02649 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
APOEP02649 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.73■□□□□ 0.27
APOEP02649 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms