Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.39■□□□□ 0.05
SLC28A1O00337 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.39■□□□□ 0.05
SLC28A1O00337 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.39■□□□□ 0.05
SLC28A1O00337 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.39■□□□□ 0.05
SLC28A1O00337 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.39■□□□□ 0.05
SLC28A1O00337 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 REXO1L1P-202ENST00000608646 1974 ntBASIC15.39■□□□□ 0.05
SLC28A1O00337 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
SLC28A1O00337 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.39■□□□□ 0.05
SLC28A1O00337 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 FAM220BP-201ENST00000377689 816 ntBASIC15.39■□□□□ 0.05
SLC28A1O00337 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.39■□□□□ 0.05
SLC28A1O00337 RPS8P6-201ENST00000426177 609 ntBASIC15.39■□□□□ 0.05
SLC28A1O00337 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.39■□□□□ 0.05
SLC28A1O00337 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.39■□□□□ 0.05
SLC28A1O00337 RN7SL589P-201ENST00000481268 310 ntBASIC15.39■□□□□ 0.05
SLC28A1O00337 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.39■□□□□ 0.05
SLC28A1O00337 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.39■□□□□ 0.05
SLC28A1O00337 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.39■□□□□ 0.05
SLC28A1O00337 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.39■□□□□ 0.05
SLC28A1O00337 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.39■□□□□ 0.05
SLC28A1O00337 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.39■□□□□ 0.05
SLC28A1O00337 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 AC091812.2-201ENST00000619081 385 ntBASIC15.39■□□□□ 0.05
SLC28A1O00337 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
SLC28A1O00337 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.39■□□□□ 0.05
SLC28A1O00337 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.39■□□□□ 0.05
SLC28A1O00337 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
SLC28A1O00337 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
SLC28A1O00337 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.39■□□□□ 0.05
SLC28A1O00337 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
SLC28A1O00337 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.39■□□□□ 0.05
SLC28A1O00337 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SLC28A1O00337 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
SLC28A1O00337 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.38■□□□□ 0.05
SLC28A1O00337 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.38■□□□□ 0.05
SLC28A1O00337 AC092127.1-201ENST00000567093 3455 ntBASIC15.38■□□□□ 0.05
SLC28A1O00337 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.38■□□□□ 0.05
SLC28A1O00337 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.38■□□□□ 0.05
SLC28A1O00337 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.38■□□□□ 0.05
SLC28A1O00337 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.38■□□□□ 0.05
SLC28A1O00337 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
SLC28A1O00337 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
SLC28A1O00337 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.38■□□□□ 0.05
SLC28A1O00337 AC142381.1-201ENST00000426099 345 ntBASIC15.38■□□□□ 0.05
SLC28A1O00337 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.38■□□□□ 0.05
SLC28A1O00337 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
SLC28A1O00337 FDX1P1-201ENST00000449115 551 ntBASIC15.38■□□□□ 0.05
SLC28A1O00337 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.38■□□□□ 0.05
SLC28A1O00337 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.38■□□□□ 0.05
SLC28A1O00337 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.38■□□□□ 0.05
SLC28A1O00337 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
SLC28A1O00337 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.38■□□□□ 0.05
SLC28A1O00337 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.38■□□□□ 0.05
SLC28A1O00337 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
SLC28A1O00337 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.38■□□□□ 0.05
SLC28A1O00337 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.38■□□□□ 0.05
SLC28A1O00337 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.38■□□□□ 0.05
SLC28A1O00337 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
SLC28A1O00337 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
SLC28A1O00337 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms