Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.94■□□□□ 0.3
SOX4Q06945 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.94■□□□□ 0.3
SOX4Q06945 BRI3BPP1-201ENST00000594224 787 ntBASIC16.94■□□□□ 0.3
SOX4Q06945 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.94■□□□□ 0.3
SOX4Q06945 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.94■□□□□ 0.3
SOX4Q06945 AL121723.1-201ENST00000445194 1519 ntBASIC16.94■□□□□ 0.3
SOX4Q06945 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.94■□□□□ 0.3
SOX4Q06945 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
SOX4Q06945 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.94■□□□□ 0.3
SOX4Q06945 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.94■□□□□ 0.3
SOX4Q06945 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.94■□□□□ 0.3
SOX4Q06945 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
SOX4Q06945 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SOX4Q06945 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SOX4Q06945 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX4Q06945 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX4Q06945 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
SOX4Q06945 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.93■□□□□ 0.3
SOX4Q06945 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SOX4Q06945 AP003680.1-201ENST00000598970 3660 ntBASIC16.93■□□□□ 0.3
SOX4Q06945 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SOX4Q06945 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
SOX4Q06945 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.93■□□□□ 0.3
SOX4Q06945 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SOX4Q06945 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX4Q06945 AC011495.1-201ENST00000498085 584 ntBASIC16.93■□□□□ 0.3
SOX4Q06945 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.93■□□□□ 0.3
SOX4Q06945 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.93■□□□□ 0.3
SOX4Q06945 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.93■□□□□ 0.3
SOX4Q06945 AL033527.5-201ENST00000641382 801 ntBASIC16.93■□□□□ 0.3
SOX4Q06945 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX4Q06945 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.93■□□□□ 0.3
SOX4Q06945 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.93■□□□□ 0.3
SOX4Q06945 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SOX4Q06945 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SOX4Q06945 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.93■□□□□ 0.3
SOX4Q06945 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX4Q06945 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SOX4Q06945 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX4Q06945 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.93■□□□□ 0.3
SOX4Q06945 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SOX4Q06945 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
SOX4Q06945 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
SOX4Q06945 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX4Q06945 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
SOX4Q06945 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX4Q06945 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX4Q06945 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX4Q06945 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX4Q06945 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
SOX4Q06945 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.92■□□□□ 0.3
SOX4Q06945 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX4Q06945 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
SOX4Q06945 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX4Q06945 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX4Q06945 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX4Q06945 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.92■□□□□ 0.3
SOX4Q06945 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
SOX4Q06945 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC16.92■□□□□ 0.3
SOX4Q06945 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.92■□□□□ 0.3
SOX4Q06945 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.92■□□□□ 0.3
SOX4Q06945 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.92■□□□□ 0.3
SOX4Q06945 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.92■□□□□ 0.3
SOX4Q06945 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX4Q06945 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.92■□□□□ 0.3
SOX4Q06945 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX4Q06945 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.92■□□□□ 0.3
SOX4Q06945 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.92■□□□□ 0.3
SOX4Q06945 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX4Q06945 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
SOX4Q06945 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
SOX4Q06945 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX4Q06945 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.92■□□□□ 0.3
SOX4Q06945 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.92■□□□□ 0.3
SOX4Q06945 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX4Q06945 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.92■□□□□ 0.3
SOX4Q06945 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
SOX4Q06945 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX4Q06945 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
SOX4Q06945 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
SOX4Q06945 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SOX4Q06945 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.92■□□□□ 0.3
SOX4Q06945 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
SOX4Q06945 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SOX4Q06945 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
SOX4Q06945 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.91■□□□□ 0.3
SOX4Q06945 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX4Q06945 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX4Q06945 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SOX4Q06945 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms