Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 LINC02447-202ENST00000501888 2146 ntBASIC18.68■□□□□ 0.58
RHBDL3P58872 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC18.68■□□□□ 0.58
RHBDL3P58872 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.68■□□□□ 0.58
RHBDL3P58872 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RHBDL3P58872 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.68■□□□□ 0.58
RHBDL3P58872 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RHBDL3P58872 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RHBDL3P58872 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.68■□□□□ 0.58
RHBDL3P58872 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RHBDL3P58872 AC020916.1-201ENST00000587762 1774 ntBASIC18.68■□□□□ 0.58
RHBDL3P58872 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RHBDL3P58872 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RHBDL3P58872 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.68■□□□□ 0.58
RHBDL3P58872 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.67■□□□□ 0.58
RHBDL3P58872 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
RHBDL3P58872 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RHBDL3P58872 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.67■□□□□ 0.58
RHBDL3P58872 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC18.67■□□□□ 0.58
RHBDL3P58872 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
RHBDL3P58872 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.67■□□□□ 0.58
RHBDL3P58872 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RHBDL3P58872 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RHBDL3P58872 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RHBDL3P58872 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC18.67■□□□□ 0.58
RHBDL3P58872 BAATP1-201ENST00000412284 1225 ntBASIC18.67■□□□□ 0.58
RHBDL3P58872 USB1-202ENST00000423271 1217 ntTSL 2 BASIC18.67■□□□□ 0.58
RHBDL3P58872 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RHBDL3P58872 AC012441.1-201ENST00000446669 685 ntBASIC18.67■□□□□ 0.58
RHBDL3P58872 CTBP2P5-201ENST00000454986 1264 ntBASIC18.67■□□□□ 0.58
RHBDL3P58872 MFF-223ENST00000524634 647 ntTSL 2 BASIC18.67■□□□□ 0.58
RHBDL3P58872 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC18.67■□□□□ 0.58
RHBDL3P58872 AP001063.1-201ENST00000568332 529 ntBASIC18.67■□□□□ 0.58
RHBDL3P58872 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC18.67■□□□□ 0.58
RHBDL3P58872 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.67■□□□□ 0.58
RHBDL3P58872 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.67■□□□□ 0.58
RHBDL3P58872 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
RHBDL3P58872 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RHBDL3P58872 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
RHBDL3P58872 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RHBDL3P58872 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.67■□□□□ 0.58
RHBDL3P58872 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC18.66■□□□□ 0.58
RHBDL3P58872 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RHBDL3P58872 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RHBDL3P58872 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RHBDL3P58872 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
RHBDL3P58872 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
RHBDL3P58872 AC112504.1-201ENST00000623415 1841 ntBASIC18.66■□□□□ 0.58
RHBDL3P58872 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC18.66■□□□□ 0.58
RHBDL3P58872 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
RHBDL3P58872 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RHBDL3P58872 AC106760.1-201ENST00000508690 800 ntBASIC18.66■□□□□ 0.58
RHBDL3P58872 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC18.66■□□□□ 0.58
RHBDL3P58872 AC009486.1-201ENST00000569860 813 ntBASIC18.66■□□□□ 0.58
RHBDL3P58872 ATF5-205ENST00000600336 682 ntTSL 2 BASIC18.66■□□□□ 0.58
RHBDL3P58872 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC18.66■□□□□ 0.58
RHBDL3P58872 MIR6799-201ENST00000620297 69 ntBASIC18.66■□□□□ 0.58
RHBDL3P58872 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RHBDL3P58872 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC18.66■□□□□ 0.58
RHBDL3P58872 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
RHBDL3P58872 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
RHBDL3P58872 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RHBDL3P58872 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RHBDL3P58872 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
RHBDL3P58872 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.66■□□□□ 0.58
RHBDL3P58872 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
RHBDL3P58872 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.65■□□□□ 0.58
RHBDL3P58872 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
RHBDL3P58872 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RHBDL3P58872 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RHBDL3P58872 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RHBDL3P58872 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RHBDL3P58872 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RHBDL3P58872 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC18.65■□□□□ 0.58
RHBDL3P58872 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
RHBDL3P58872 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
RHBDL3P58872 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RHBDL3P58872 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
RHBDL3P58872 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RHBDL3P58872 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RHBDL3P58872 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC18.65■□□□□ 0.58
RHBDL3P58872 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC18.65■□□□□ 0.58
RHBDL3P58872 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
RHBDL3P58872 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
RHBDL3P58872 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC18.65■□□□□ 0.58
RHBDL3P58872 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC18.65■□□□□ 0.58
RHBDL3P58872 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RHBDL3P58872 METTL26-214ENST00000614890 801 ntTSL 3 BASIC18.65■□□□□ 0.58
RHBDL3P58872 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC18.65■□□□□ 0.58
RHBDL3P58872 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC18.65■□□□□ 0.58
RHBDL3P58872 BLK-205ENST00000529894 2017 ntTSL 5 BASIC18.65■□□□□ 0.58
RHBDL3P58872 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RHBDL3P58872 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RHBDL3P58872 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RHBDL3P58872 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RHBDL3P58872 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC18.65■□□□□ 0.58
RHBDL3P58872 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RHBDL3P58872 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.65■□□□□ 0.58
RHBDL3P58872 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RHBDL3P58872 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
RHBDL3P58872 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms