Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.32■□□□□ 0.04
MSX2P35548 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.32■□□□□ 0.04
MSX2P35548 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.32■□□□□ 0.04
MSX2P35548 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.32■□□□□ 0.04
MSX2P35548 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.32■□□□□ 0.04
MSX2P35548 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
MSX2P35548 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
MSX2P35548 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.32■□□□□ 0.04
MSX2P35548 AC013726.1-201ENST00000563747 2285 ntBASIC15.32■□□□□ 0.04
MSX2P35548 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC15.32■□□□□ 0.04
MSX2P35548 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
MSX2P35548 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.31■□□□□ 0.04
MSX2P35548 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 TNN-203ENST00000622870 3719 ntTSL 5 BASIC15.31■□□□□ 0.04
MSX2P35548 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 AC011477.6-201ENST00000604980 1927 ntBASIC15.31■□□□□ 0.04
MSX2P35548 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC15.31■□□□□ 0.04
MSX2P35548 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.31■□□□□ 0.04
MSX2P35548 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.31■□□□□ 0.04
MSX2P35548 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC15.31■□□□□ 0.04
MSX2P35548 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
MSX2P35548 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.31■□□□□ 0.04
MSX2P35548 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 KRT16P4-201ENST00000453883 522 ntBASIC15.31■□□□□ 0.04
MSX2P35548 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC15.31■□□□□ 0.04
MSX2P35548 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.31■□□□□ 0.04
MSX2P35548 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC15.31■□□□□ 0.04
MSX2P35548 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
MSX2P35548 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
MSX2P35548 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.31■□□□□ 0.04
MSX2P35548 AL805961.1-202ENST00000641562 540 ntBASIC15.31■□□□□ 0.04
MSX2P35548 AC129492.6-201ENST00000611383 1305 ntBASIC15.31■□□□□ 0.04
MSX2P35548 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.31■□□□□ 0.04
MSX2P35548 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
MSX2P35548 AC134407.2-201ENST00000625089 1978 ntBASIC15.31■□□□□ 0.04
MSX2P35548 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
MSX2P35548 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MSX2P35548 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.3■□□□□ 0.04
MSX2P35548 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.3■□□□□ 0.04
MSX2P35548 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
MSX2P35548 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
MSX2P35548 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.3■□□□□ 0.04
MSX2P35548 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.3■□□□□ 0.04
MSX2P35548 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
MSX2P35548 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.3■□□□□ 0.04
MSX2P35548 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.3■□□□□ 0.04
MSX2P35548 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC15.3■□□□□ 0.04
MSX2P35548 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
MSX2P35548 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.3■□□□□ 0.04
MSX2P35548 AC012569.1-201ENST00000591191 1524 ntBASIC15.3■□□□□ 0.04
MSX2P35548 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC15.3■□□□□ 0.04
MSX2P35548 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSX2P35548 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms