Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 AC022532.1-201ENST00000624563 1728 ntBASIC12.23□□□□□ -0.45
HLA-DMBP28068 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 AC004832.2-201ENST00000426397 482 ntBASIC12.23□□□□□ -0.45
HLA-DMBP28068 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 NMU-203ENST00000507338 658 ntTSL 3 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 QPRT-203ENST00000562473 579 ntTSL 3 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 MTDHP5-201ENST00000598980 586 ntBASIC12.23□□□□□ -0.45
HLA-DMBP28068 MED16-214ENST00000617672 554 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 GSN-206ENST00000394353 2311 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC12.23□□□□□ -0.45
HLA-DMBP28068 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HLA-DMBP28068 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 NARF-206ENST00000457415 1668 ntTSL 5 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 AL589702.1-201ENST00000641229 1509 ntBASIC12.22□□□□□ -0.45
HLA-DMBP28068 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 LINC02228-204ENST00000642115 2962 ntBASIC12.22□□□□□ -0.45
HLA-DMBP28068 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 AC134407.2-201ENST00000625089 1978 ntBASIC12.22□□□□□ -0.45
HLA-DMBP28068 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HLA-DMBP28068 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 HNRNPA1P28-201ENST00000424481 961 ntBASIC12.22□□□□□ -0.45
HLA-DMBP28068 GPX1P2-201ENST00000429271 606 ntBASIC12.22□□□□□ -0.45
HLA-DMBP28068 AC140658.5-201ENST00000438532 169 ntBASIC12.22□□□□□ -0.45
HLA-DMBP28068 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 KRT19P2-202ENST00000557173 1012 ntBASIC12.22□□□□□ -0.45
HLA-DMBP28068 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC12.22□□□□□ -0.45
HLA-DMBP28068 AL691403.2-201ENST00000618460 490 ntBASIC12.22□□□□□ -0.45
HLA-DMBP28068 HOTTIP_1.1-201ENST00000620415 57 ntBASIC12.22□□□□□ -0.45
HLA-DMBP28068 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms