Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 AC020907.1-201ENST00000616460 1350 ntBASIC17.8■□□□□ 0.44
COL11A1P12107 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL11A1P12107 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL11A1P12107 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COL11A1P12107 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.8■□□□□ 0.44
COL11A1P12107 AC006033.1-201ENST00000440505 426 ntBASIC17.8■□□□□ 0.44
COL11A1P12107 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
COL11A1P12107 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
COL11A1P12107 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC17.8■□□□□ 0.44
COL11A1P12107 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL11A1P12107 PRKN-211ENST00000615065 261 ntTSL 5 BASIC17.8■□□□□ 0.44
COL11A1P12107 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC17.8■□□□□ 0.44
COL11A1P12107 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL11A1P12107 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL11A1P12107 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.8■□□□□ 0.44
COL11A1P12107 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
COL11A1P12107 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL11A1P12107 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL11A1P12107 AL596087.1-201ENST00000400979 1969 ntBASIC17.8■□□□□ 0.44
COL11A1P12107 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL11A1P12107 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL11A1P12107 AC148477.4-201ENST00000613430 1793 ntBASIC17.8■□□□□ 0.44
COL11A1P12107 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL11A1P12107 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL11A1P12107 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.79■□□□□ 0.44
COL11A1P12107 C2orf27AP3-201ENST00000434123 579 ntBASIC17.79■□□□□ 0.44
COL11A1P12107 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC17.79■□□□□ 0.44
COL11A1P12107 ECM1P1-201ENST00000604092 1279 ntBASIC17.79■□□□□ 0.44
COL11A1P12107 AL354718.3-201ENST00000616414 581 ntBASIC17.79■□□□□ 0.44
COL11A1P12107 CR382287.1-201ENST00000623954 586 ntBASIC17.79■□□□□ 0.44
COL11A1P12107 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL11A1P12107 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC17.79■□□□□ 0.44
COL11A1P12107 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL11A1P12107 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
COL11A1P12107 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.79■□□□□ 0.44
COL11A1P12107 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17.79■□□□□ 0.44
COL11A1P12107 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.79■□□□□ 0.44
COL11A1P12107 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.79■□□□□ 0.44
COL11A1P12107 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL11A1P12107 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL11A1P12107 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL11A1P12107 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL11A1P12107 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.79■□□□□ 0.44
COL11A1P12107 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.79■□□□□ 0.44
COL11A1P12107 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL11A1P12107 EIF3FP3-201ENST00000434851 1086 ntBASIC17.79■□□□□ 0.44
COL11A1P12107 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.79■□□□□ 0.44
COL11A1P12107 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC17.79■□□□□ 0.44
COL11A1P12107 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC17.79■□□□□ 0.44
COL11A1P12107 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL11A1P12107 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC17.79■□□□□ 0.44
COL11A1P12107 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
COL11A1P12107 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL11A1P12107 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL11A1P12107 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL11A1P12107 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL11A1P12107 AL603832.2-201ENST00000566195 2125 ntBASIC17.78■□□□□ 0.44
COL11A1P12107 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL11A1P12107 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.78■□□□□ 0.44
COL11A1P12107 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC17.78■□□□□ 0.44
COL11A1P12107 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC17.78■□□□□ 0.44
COL11A1P12107 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC17.78■□□□□ 0.44
COL11A1P12107 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL11A1P12107 AC009486.1-201ENST00000569860 813 ntBASIC17.78■□□□□ 0.44
COL11A1P12107 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC17.78■□□□□ 0.44
COL11A1P12107 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL11A1P12107 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL11A1P12107 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL11A1P12107 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL11A1P12107 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL11A1P12107 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL11A1P12107 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL11A1P12107 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL11A1P12107 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.78■□□□□ 0.44
COL11A1P12107 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL11A1P12107 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.78■□□□□ 0.44
COL11A1P12107 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL11A1P12107 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL11A1P12107 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL11A1P12107 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL11A1P12107 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.77■□□□□ 0.44
COL11A1P12107 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.44
COL11A1P12107 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
COL11A1P12107 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL11A1P12107 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL11A1P12107 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL11A1P12107 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.77■□□□□ 0.44
COL11A1P12107 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC17.77■□□□□ 0.44
COL11A1P12107 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC17.77■□□□□ 0.44
COL11A1P12107 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL11A1P12107 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC17.77■□□□□ 0.44
COL11A1P12107 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC17.77■□□□□ 0.44
COL11A1P12107 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL11A1P12107 IGHV3OR16-16-201ENST00000563644 343 ntBASIC17.77■□□□□ 0.44
COL11A1P12107 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.77■□□□□ 0.44
COL11A1P12107 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
COL11A1P12107 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
COL11A1P12107 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL11A1P12107 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL11A1P12107 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms