Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL3A1P02461 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
COL3A1P02461 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
COL3A1P02461 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
COL3A1P02461 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC20.73■□□□□ 0.91
COL3A1P02461 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
COL3A1P02461 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL3A1P02461 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL3A1P02461 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL3A1P02461 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL3A1P02461 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
COL3A1P02461 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL3A1P02461 OR8S1-201ENST00000310194 1080 ntBASIC20.72■□□□□ 0.91
COL3A1P02461 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL3A1P02461 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC20.72■□□□□ 0.91
COL3A1P02461 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL3A1P02461 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC20.72■□□□□ 0.91
COL3A1P02461 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC20.72■□□□□ 0.91
COL3A1P02461 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC20.72■□□□□ 0.91
COL3A1P02461 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC20.72■□□□□ 0.91
COL3A1P02461 NEU3-203ENST00000529024 581 ntTSL 3 BASIC20.72■□□□□ 0.91
COL3A1P02461 IFT20-206ENST00000578122 834 ntTSL 2 BASIC20.72■□□□□ 0.91
COL3A1P02461 IFT20-208ENST00000578985 831 ntTSL 3 BASIC20.72■□□□□ 0.91
COL3A1P02461 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC20.72■□□□□ 0.91
COL3A1P02461 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC20.72■□□□□ 0.91
COL3A1P02461 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC20.72■□□□□ 0.91
COL3A1P02461 AL645728.2-202ENST00000641679 227 ntBASIC20.72■□□□□ 0.91
COL3A1P02461 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL3A1P02461 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL3A1P02461 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
COL3A1P02461 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL3A1P02461 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL3A1P02461 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL3A1P02461 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL3A1P02461 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC20.71■□□□□ 0.91
COL3A1P02461 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.71■□□□□ 0.91
COL3A1P02461 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL3A1P02461 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC20.71■□□□□ 0.91
COL3A1P02461 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL3A1P02461 AC092850.2-201ENST00000623821 2697 ntBASIC20.71■□□□□ 0.91
COL3A1P02461 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL3A1P02461 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL3A1P02461 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL3A1P02461 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL3A1P02461 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
COL3A1P02461 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL3A1P02461 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC20.71■□□□□ 0.91
COL3A1P02461 AC022137.2-201ENST00000503482 481 ntBASIC20.71■□□□□ 0.91
COL3A1P02461 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC20.71■□□□□ 0.91
COL3A1P02461 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC20.71■□□□□ 0.91
COL3A1P02461 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC20.71■□□□□ 0.91
COL3A1P02461 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC20.71■□□□□ 0.91
COL3A1P02461 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC20.71■□□□□ 0.91
COL3A1P02461 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL3A1P02461 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
COL3A1P02461 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL3A1P02461 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
COL3A1P02461 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL3A1P02461 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
COL3A1P02461 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
COL3A1P02461 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.91
COL3A1P02461 AC018665.1-201ENST00000622927 1362 ntBASIC20.7■□□□□ 0.9
COL3A1P02461 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
COL3A1P02461 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC20.7■□□□□ 0.9
COL3A1P02461 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
COL3A1P02461 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC20.7■□□□□ 0.9
COL3A1P02461 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
COL3A1P02461 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC20.7■□□□□ 0.9
COL3A1P02461 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC20.7■□□□□ 0.9
COL3A1P02461 ARSEP1-201ENST00000420443 635 ntBASIC20.7■□□□□ 0.9
COL3A1P02461 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC20.7■□□□□ 0.9
COL3A1P02461 AC012441.1-201ENST00000446669 685 ntBASIC20.7■□□□□ 0.9
COL3A1P02461 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC20.7■□□□□ 0.9
COL3A1P02461 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC20.7■□□□□ 0.9
COL3A1P02461 AC093813.1-201ENST00000605066 256 ntBASIC20.7■□□□□ 0.9
COL3A1P02461 AL162274.1-201ENST00000617191 1098 ntBASIC20.7■□□□□ 0.9
COL3A1P02461 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC20.7■□□□□ 0.9
COL3A1P02461 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
COL3A1P02461 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC20.7■□□□□ 0.9
COL3A1P02461 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.7■□□□□ 0.9
COL3A1P02461 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC20.7■□□□□ 0.9
COL3A1P02461 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC20.7■□□□□ 0.9
COL3A1P02461 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC20.7■□□□□ 0.9
COL3A1P02461 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL3A1P02461 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms