Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC11O43248 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC11O43248 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HOXC11O43248 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HOXC11O43248 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
HOXC11O43248 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC11O43248 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.18■□□□□ 0.18
HOXC11O43248 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 AL607033.1-201ENST00000623900 1599 ntBASIC16.18■□□□□ 0.18
HOXC11O43248 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC11O43248 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
HOXC11O43248 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.18■□□□□ 0.18
HOXC11O43248 MIR1909-201ENST00000411312 80 ntBASIC16.18■□□□□ 0.18
HOXC11O43248 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.18■□□□□ 0.18
HOXC11O43248 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC11O43248 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.18■□□□□ 0.18
HOXC11O43248 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 RPL13AP25-201ENST00000484130 612 ntBASIC16.18■□□□□ 0.18
HOXC11O43248 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.18■□□□□ 0.18
HOXC11O43248 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HOXC11O43248 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.18■□□□□ 0.18
HOXC11O43248 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.18■□□□□ 0.18
HOXC11O43248 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC11O43248 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.18■□□□□ 0.18
HOXC11O43248 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC11O43248 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC11O43248 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.18■□□□□ 0.18
HOXC11O43248 AL512343.1-201ENST00000605837 169 ntBASIC16.18■□□□□ 0.18
HOXC11O43248 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
HOXC11O43248 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.18■□□□□ 0.18
HOXC11O43248 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC11O43248 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC11O43248 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC11O43248 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC11O43248 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.18■□□□□ 0.18
HOXC11O43248 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HOXC11O43248 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.18■□□□□ 0.18
HOXC11O43248 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.17■□□□□ 0.18
HOXC11O43248 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.17■□□□□ 0.18
HOXC11O43248 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
HOXC11O43248 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 AC011477.6-201ENST00000604980 1927 ntBASIC16.17■□□□□ 0.18
HOXC11O43248 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
HOXC11O43248 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.17■□□□□ 0.18
HOXC11O43248 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HOXC11O43248 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.17■□□□□ 0.18
HOXC11O43248 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.17■□□□□ 0.18
HOXC11O43248 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
HOXC11O43248 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
HOXC11O43248 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.17■□□□□ 0.18
HOXC11O43248 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.17■□□□□ 0.18
HOXC11O43248 AC022210.1-201ENST00000449856 793 ntBASIC16.17■□□□□ 0.18
HOXC11O43248 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.17■□□□□ 0.18
HOXC11O43248 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.17■□□□□ 0.18
HOXC11O43248 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.17■□□□□ 0.18
HOXC11O43248 AC000095.1-201ENST00000603208 874 ntBASIC16.17■□□□□ 0.18
HOXC11O43248 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 CU634019.7-201ENST00000624153 1185 ntBASIC16.17■□□□□ 0.18
HOXC11O43248 FP236241.2-201ENST00000624906 1185 ntBASIC16.17■□□□□ 0.18
HOXC11O43248 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.17■□□□□ 0.18
HOXC11O43248 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
HOXC11O43248 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
HOXC11O43248 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.17■□□□□ 0.18
HOXC11O43248 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.17■□□□□ 0.18
HOXC11O43248 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.17■□□□□ 0.18
HOXC11O43248 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.17■□□□□ 0.18
HOXC11O43248 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC11O43248 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
HOXC11O43248 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HOXC11O43248 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms