Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 AC021723.1-201ENST00000486306 515 ntBASIC12.13□□□□□ -0.47
COL6A5A8TX70 RN7SL67P-201ENST00000492147 296 ntBASIC12.13□□□□□ -0.47
COL6A5A8TX70 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
COL6A5A8TX70 AL132780.4-201ENST00000624870 1135 ntBASIC12.13□□□□□ -0.47
COL6A5A8TX70 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC12.13□□□□□ -0.47
COL6A5A8TX70 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
COL6A5A8TX70 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
COL6A5A8TX70 HLA-A-202ENST00000376806 1854 ntBASIC12.12□□□□□ -0.47
COL6A5A8TX70 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 HNRNPA1P42-201ENST00000458678 957 ntBASIC12.12□□□□□ -0.47
COL6A5A8TX70 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 AC005740.2-201ENST00000511085 419 ntBASIC12.12□□□□□ -0.47
COL6A5A8TX70 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 MIR5196-201ENST00000578146 115 ntBASIC12.12□□□□□ -0.47
COL6A5A8TX70 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 MIR6858-201ENST00000620733 67 ntBASIC12.12□□□□□ -0.47
COL6A5A8TX70 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 HPGD-203ENST00000422112 805 ntTSL 2 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 ISCA2P1-201ENST00000425548 448 ntBASIC12.12□□□□□ -0.47
COL6A5A8TX70 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 AC079328.2-201ENST00000561241 3354 ntBASIC12.12□□□□□ -0.47
COL6A5A8TX70 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
COL6A5A8TX70 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
COL6A5A8TX70 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 PGGT1BP2-201ENST00000398621 1028 ntBASIC12.11□□□□□ -0.47
COL6A5A8TX70 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 AC245100.5-201ENST00000452108 331 ntBASIC12.11□□□□□ -0.47
COL6A5A8TX70 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 POU5F1P2-201ENST00000521750 823 ntBASIC12.11□□□□□ -0.47
COL6A5A8TX70 AP003171.2-201ENST00000528208 925 ntBASIC12.11□□□□□ -0.47
COL6A5A8TX70 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 TK1-203ENST00000588734 1681 ntTSL 2 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
COL6A5A8TX70 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 LETM1P2-201ENST00000597330 2178 ntBASIC12.11□□□□□ -0.47
COL6A5A8TX70 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
COL6A5A8TX70 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms