Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
TTC28Q96AY4 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC24.52■■□□□ 1.52
TTC28Q96AY4 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC24.52■■□□□ 1.52
TTC28Q96AY4 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC24.52■■□□□ 1.52
TTC28Q96AY4 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC24.52■■□□□ 1.52
TTC28Q96AY4 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.52■■□□□ 1.52
TTC28Q96AY4 VPS53-216ENST00000574029 585 ntTSL 4 BASIC24.52■■□□□ 1.52
TTC28Q96AY4 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
TTC28Q96AY4 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC24.52■■□□□ 1.52
TTC28Q96AY4 SERBP1P1-201ENST00000396021 1160 ntBASIC24.52■■□□□ 1.52
TTC28Q96AY4 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC24.52■■□□□ 1.52
TTC28Q96AY4 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC24.51■■□□□ 1.51
TTC28Q96AY4 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
TTC28Q96AY4 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
TTC28Q96AY4 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
TTC28Q96AY4 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
TTC28Q96AY4 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
TTC28Q96AY4 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC24.5■■□□□ 1.51
TTC28Q96AY4 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC24.5■■□□□ 1.51
TTC28Q96AY4 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC24.49■■□□□ 1.51
TTC28Q96AY4 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
TTC28Q96AY4 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TTC28Q96AY4 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TTC28Q96AY4 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
TTC28Q96AY4 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
TTC28Q96AY4 GAK-223ENST00000628912 497 ntTSL 5 BASIC24.49■■□□□ 1.51
TTC28Q96AY4 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TTC28Q96AY4 AP002414.2-202ENST00000590929 1450 ntBASIC24.49■■□□□ 1.51
TTC28Q96AY4 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TTC28Q96AY4 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
TTC28Q96AY4 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC24.48■■□□□ 1.51
TTC28Q96AY4 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC24.48■■□□□ 1.51
TTC28Q96AY4 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
TTC28Q96AY4 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC24.47■■□□□ 1.51
TTC28Q96AY4 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
TTC28Q96AY4 SNX5-217ENST00000606557 1087 ntBASIC24.47■■□□□ 1.51
TTC28Q96AY4 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC24.47■■□□□ 1.51
TTC28Q96AY4 AC004448.1-201ENST00000458332 883 ntBASIC24.46■■□□□ 1.51
TTC28Q96AY4 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC24.46■■□□□ 1.51
TTC28Q96AY4 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC24.46■■□□□ 1.51
TTC28Q96AY4 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC24.46■■□□□ 1.51
TTC28Q96AY4 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC24.46■■□□□ 1.51
TTC28Q96AY4 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
TTC28Q96AY4 AC011298.3-201ENST00000615796 283 ntBASIC24.45■■□□□ 1.51
TTC28Q96AY4 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC24.45■■□□□ 1.51
TTC28Q96AY4 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC24.45■■□□□ 1.51
TTC28Q96AY4 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
TTC28Q96AY4 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
TTC28Q96AY4 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
TTC28Q96AY4 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
TTC28Q96AY4 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
TTC28Q96AY4 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
TTC28Q96AY4 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
TTC28Q96AY4 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
TTC28Q96AY4 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC24.43■■□□□ 1.5
TTC28Q96AY4 GXYLT1P5-201ENST00000614548 1189 ntBASIC24.43■■□□□ 1.5
TTC28Q96AY4 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.43■■□□□ 1.5
TTC28Q96AY4 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
TTC28Q96AY4 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
TTC28Q96AY4 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
TTC28Q96AY4 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
TTC28Q96AY4 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
TTC28Q96AY4 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC24.43■■□□□ 1.5
TTC28Q96AY4 RAB43-208ENST00000615093 783 ntTSL 5 BASIC24.43■■□□□ 1.5
TTC28Q96AY4 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
TTC28Q96AY4 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
TTC28Q96AY4 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
TTC28Q96AY4 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
TTC28Q96AY4 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
TTC28Q96AY4 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
TTC28Q96AY4 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC24.42■■□□□ 1.5
TTC28Q96AY4 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
TTC28Q96AY4 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
TTC28Q96AY4 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
TTC28Q96AY4 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
TTC28Q96AY4 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC24.42■■□□□ 1.5
TTC28Q96AY4 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC24.41■■□□□ 1.5
TTC28Q96AY4 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC24.41■■□□□ 1.5
TTC28Q96AY4 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC24.41■■□□□ 1.5
TTC28Q96AY4 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC24.41■■□□□ 1.5
TTC28Q96AY4 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC24.41■■□□□ 1.5
TTC28Q96AY4 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
TTC28Q96AY4 AC099791.1-201ENST00000416440 715 ntBASIC24.4■■□□□ 1.5
TTC28Q96AY4 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
TTC28Q96AY4 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC24.4■■□□□ 1.5
TTC28Q96AY4 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
TTC28Q96AY4 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC24.39■■□□□ 1.5
TTC28Q96AY4 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.5
TTC28Q96AY4 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC24.39■■□□□ 1.49
TTC28Q96AY4 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
TTC28Q96AY4 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC24.39■■□□□ 1.49
TTC28Q96AY4 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC24.39■■□□□ 1.49
TTC28Q96AY4 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC24.39■■□□□ 1.49
TTC28Q96AY4 AL138724.1-201ENST00000606771 1088 ntBASIC24.39■■□□□ 1.49
TTC28Q96AY4 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC24.39■■□□□ 1.49
TTC28Q96AY4 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC24.38■■□□□ 1.49
TTC28Q96AY4 AC104771.1-201ENST00000603335 964 ntBASIC24.38■■□□□ 1.49
TTC28Q96AY4 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC24.38■■□□□ 1.49
TTC28Q96AY4 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
TTC28Q96AY4 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms