Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SYNE1Q8NF91 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SYNE1Q8NF91 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC7.17□□□□□ -1.26
SYNE1Q8NF91 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 AC096631.2-201ENST00000436136 790 ntBASIC7.16□□□□□ -1.26
SYNE1Q8NF91 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC7.16□□□□□ -1.26
SYNE1Q8NF91 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
SYNE1Q8NF91 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC7.15□□□□□ -1.26
SYNE1Q8NF91 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC7.15□□□□□ -1.26
SYNE1Q8NF91 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
SYNE1Q8NF91 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
SYNE1Q8NF91 AL031432.3-201ENST00000607698 485 ntBASIC7.15□□□□□ -1.26
SYNE1Q8NF91 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
SYNE1Q8NF91 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC7.15□□□□□ -1.26
SYNE1Q8NF91 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC7.15□□□□□ -1.27
SYNE1Q8NF91 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
SYNE1Q8NF91 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
SYNE1Q8NF91 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC7.15□□□□□ -1.27
SYNE1Q8NF91 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
SYNE1Q8NF91 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC7.15□□□□□ -1.27
SYNE1Q8NF91 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
SYNE1Q8NF91 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC7.15□□□□□ -1.27
SYNE1Q8NF91 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC7.15□□□□□ -1.27
SYNE1Q8NF91 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
SYNE1Q8NF91 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC7.15□□□□□ -1.27
SYNE1Q8NF91 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.27
SYNE1Q8NF91 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC7.15□□□□□ -1.27
SYNE1Q8NF91 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 AF131216.4-201ENST00000638924 1588 ntBASIC7.14□□□□□ -1.27
SYNE1Q8NF91 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 TK2-202ENST00000417693 1046 ntTSL 2 BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 NALT1-201ENST00000429224 738 ntTSL 5 BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 AP004609.3-201ENST00000610705 1884 ntBASIC7.14□□□□□ -1.27
SYNE1Q8NF91 AC010997.5-201ENST00000609182 354 ntBASIC7.14□□□□□ -1.27
SYNE1Q8NF91 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC7.14□□□□□ -1.27
SYNE1Q8NF91 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 SUDS3P1-201ENST00000505831 966 ntBASIC7.13□□□□□ -1.27
SYNE1Q8NF91 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 QDPR-206ENST00000508623 601 ntTSL 3 BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 LSM4-201ENST00000252816 986 ntTSL 2 BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 SENP5-202ENST00000419026 973 ntTSL 3 BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 AC011551.1-201ENST00000614101 683 ntBASIC7.13□□□□□ -1.27
SYNE1Q8NF91 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
SYNE1Q8NF91 AC096887.2-201ENST00000623443 1957 ntBASIC7.13□□□□□ -1.27
SYNE1Q8NF91 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 MIR6724-1-201ENST00000616420 92 ntBASIC7.12□□□□□ -1.27
SYNE1Q8NF91 MIR6724-2-201ENST00000616483 92 ntBASIC7.12□□□□□ -1.27
SYNE1Q8NF91 MIR6724-4-201ENST00000617390 92 ntBASIC7.12□□□□□ -1.27
SYNE1Q8NF91 MIR6724-3-201ENST00000622482 92 ntBASIC7.12□□□□□ -1.27
SYNE1Q8NF91 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
SYNE1Q8NF91 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms