Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 AC025181.2-201ENST00000606994 802 ntBASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 AC092978.1-202ENST00000637590 1327 ntBASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 NKAIN1P1-201ENST00000435754 582 ntBASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 HIST2H2BB-201ENST00000449108 381 ntBASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 AC104982.3-201ENST00000581995 514 ntBASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 ENPP7P14-201ENST00000621765 1040 ntBASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 AC091046.1-201ENST00000331871 207 ntBASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 GHSR-202ENST00000427970 912 ntBASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 FAM8A4P-201ENST00000435433 1213 ntBASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 TMEM198B-204ENST00000484016 896 ntBASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 NCK2-206ENST00000522586 490 ntTSL 5 BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 AC069224.1-201ENST00000566372 1715 ntBASIC20.18■□□□□ 0.82
SHANK3Q9BYB0 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 AL355334.1-201ENST00000417713 215 ntBASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 NKG7-204ENST00000595217 816 ntTSL 2 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 AL158070.2-201ENST00000623713 1621 ntBASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHANK3Q9BYB0 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms