Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 FAM86LP-201ENST00000478302 853 ntBASIC15.51■□□□□ 0.07
LMX1AQ8TE12 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 AL450472.2-201ENST00000603663 1156 ntBASIC15.51■□□□□ 0.07
LMX1AQ8TE12 AL391069.4-201ENST00000609583 481 ntBASIC15.51■□□□□ 0.07
LMX1AQ8TE12 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.5■□□□□ 0.07
LMX1AQ8TE12 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 AC022210.1-201ENST00000449856 793 ntBASIC15.5■□□□□ 0.07
LMX1AQ8TE12 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.5■□□□□ 0.07
LMX1AQ8TE12 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 AC015936.2-201ENST00000593177 259 ntBASIC15.5■□□□□ 0.07
LMX1AQ8TE12 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 CU634019.7-201ENST00000624153 1185 ntBASIC15.5■□□□□ 0.07
LMX1AQ8TE12 FP236241.2-201ENST00000624906 1185 ntBASIC15.5■□□□□ 0.07
LMX1AQ8TE12 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 KRT8P22-201ENST00000562317 1415 ntBASIC15.5■□□□□ 0.07
LMX1AQ8TE12 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1AQ8TE12 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 AD000864.1-201ENST00000624076 2295 ntBASIC15.49■□□□□ 0.07
LMX1AQ8TE12 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 AL442647.2-201ENST00000429864 857 ntBASIC15.49■□□□□ 0.07
LMX1AQ8TE12 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 SLED1-202ENST00000512051 380 ntBASIC15.49■□□□□ 0.07
LMX1AQ8TE12 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.49■□□□□ 0.07
LMX1AQ8TE12 NAA38-206ENST00000576384 424 ntTSL 2 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms