Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 FAM86MP-201ENST00000340703 885 ntBASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 AC234783.1-201ENST00000441761 496 ntBASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 GNAQP1-201ENST00000444815 1067 ntBASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 AL512343.1-201ENST00000605837 169 ntBASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 AC008494.3-201ENST00000606615 944 ntBASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 AC133552.6-201ENST00000613406 534 ntBASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 AC011477.6-201ENST00000604980 1927 ntBASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC18.8■□□□□ 0.6
NKX2-3Q8TAU0 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 OSM-203ENST00000403463 464 ntTSL 3 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 TTTY23B-201ENST00000442790 549 ntBASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 NEU3-203ENST00000529024 581 ntTSL 3 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 ZNF890P-202ENST00000530367 1156 ntBASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 AC004461.2-201ENST00000629517 803 ntBASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.79■□□□□ 0.6
NKX2-3Q8TAU0 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 CICP13-201ENST00000422015 2789 ntBASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 KRT223P-202ENST00000449164 1292 ntBASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 PHKG1P2-201ENST00000457537 863 ntBASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 COX11-210ENST00000639671 696 ntBASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 AC068587.10-201ENST00000641210 219 ntBASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
NKX2-3Q8TAU0 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms