Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.97■□□□□ 0.31
SOX4Q06945 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
SOX4Q06945 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.97■□□□□ 0.31
SOX4Q06945 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.97■□□□□ 0.31
SOX4Q06945 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SOX4Q06945 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.97■□□□□ 0.31
SOX4Q06945 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
SOX4Q06945 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX4Q06945 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SOX4Q06945 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
SOX4Q06945 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.96■□□□□ 0.31
SOX4Q06945 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SOX4Q06945 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.96■□□□□ 0.31
SOX4Q06945 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SOX4Q06945 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX4Q06945 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SOX4Q06945 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
SOX4Q06945 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.96■□□□□ 0.31
SOX4Q06945 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SOX4Q06945 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX4Q06945 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.96■□□□□ 0.31
SOX4Q06945 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX4Q06945 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
SOX4Q06945 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.96■□□□□ 0.31
SOX4Q06945 TMEM14DP-201ENST00000422205 345 ntBASIC16.96■□□□□ 0.31
SOX4Q06945 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.96■□□□□ 0.31
SOX4Q06945 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.96■□□□□ 0.31
SOX4Q06945 FAM86LP-201ENST00000478302 853 ntBASIC16.96■□□□□ 0.31
SOX4Q06945 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.96■□□□□ 0.31
SOX4Q06945 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.96■□□□□ 0.31
SOX4Q06945 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.96■□□□□ 0.31
SOX4Q06945 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.96■□□□□ 0.31
SOX4Q06945 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.96■□□□□ 0.31
SOX4Q06945 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
SOX4Q06945 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.96■□□□□ 0.31
SOX4Q06945 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SOX4Q06945 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX4Q06945 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
SOX4Q06945 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.96■□□□□ 0.31
SOX4Q06945 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SOX4Q06945 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
SOX4Q06945 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SOX4Q06945 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.95■□□□□ 0.3
SOX4Q06945 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX4Q06945 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX4Q06945 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX4Q06945 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
SOX4Q06945 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SOX4Q06945 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX4Q06945 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SOX4Q06945 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX4Q06945 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX4Q06945 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SOX4Q06945 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SOX4Q06945 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
SOX4Q06945 GK-202ENST00000378941 458 ntTSL 3 BASIC16.95■□□□□ 0.3
SOX4Q06945 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.95■□□□□ 0.3
SOX4Q06945 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.95■□□□□ 0.3
SOX4Q06945 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.95■□□□□ 0.3
SOX4Q06945 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.95■□□□□ 0.3
SOX4Q06945 AC104596.2-201ENST00000512793 793 ntBASIC16.95■□□□□ 0.3
SOX4Q06945 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.95■□□□□ 0.3
SOX4Q06945 PAM16-204ENST00000571941 674 ntTSL 3 BASIC16.95■□□□□ 0.3
SOX4Q06945 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.95■□□□□ 0.3
SOX4Q06945 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.95■□□□□ 0.3
SOX4Q06945 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.95■□□□□ 0.3
SOX4Q06945 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX4Q06945 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
SOX4Q06945 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SOX4Q06945 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.95■□□□□ 0.3
SOX4Q06945 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX4Q06945 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX4Q06945 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SOX4Q06945 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX4Q06945 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
SOX4Q06945 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.94■□□□□ 0.3
SOX4Q06945 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX4Q06945 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.94■□□□□ 0.3
SOX4Q06945 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.94■□□□□ 0.3
SOX4Q06945 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.94■□□□□ 0.3
SOX4Q06945 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16.94■□□□□ 0.3
SOX4Q06945 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.94■□□□□ 0.3
SOX4Q06945 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.94■□□□□ 0.3
SOX4Q06945 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.94■□□□□ 0.3
SOX4Q06945 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.94■□□□□ 0.3
SOX4Q06945 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.94■□□□□ 0.3
SOX4Q06945 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms