Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
XRCC1P18887 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16■□□□□ 0.15
XRCC1P18887 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16■□□□□ 0.15
XRCC1P18887 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16■□□□□ 0.15
XRCC1P18887 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
XRCC1P18887 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 FAM220BP-201ENST00000377689 816 ntBASIC16■□□□□ 0.15
XRCC1P18887 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16■□□□□ 0.15
XRCC1P18887 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16■□□□□ 0.15
XRCC1P18887 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16■□□□□ 0.15
XRCC1P18887 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16■□□□□ 0.15
XRCC1P18887 AC018529.1-201ENST00000613063 361 ntBASIC16■□□□□ 0.15
XRCC1P18887 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16■□□□□ 0.15
XRCC1P18887 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16■□□□□ 0.15
XRCC1P18887 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16■□□□□ 0.15
XRCC1P18887 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16■□□□□ 0.15
XRCC1P18887 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16■□□□□ 0.15
XRCC1P18887 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16■□□□□ 0.15
XRCC1P18887 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16■□□□□ 0.15
XRCC1P18887 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16■□□□□ 0.15
XRCC1P18887 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
XRCC1P18887 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
XRCC1P18887 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16■□□□□ 0.15
XRCC1P18887 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16■□□□□ 0.15
XRCC1P18887 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.99■□□□□ 0.15
XRCC1P18887 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.99■□□□□ 0.15
XRCC1P18887 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
XRCC1P18887 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
XRCC1P18887 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
XRCC1P18887 HLA-H-201ENST00000383620 1096 ntBASIC15.99■□□□□ 0.15
XRCC1P18887 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.99■□□□□ 0.15
XRCC1P18887 AC093724.1-201ENST00000448659 1027 ntBASIC15.99■□□□□ 0.15
XRCC1P18887 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.99■□□□□ 0.15
XRCC1P18887 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.99■□□□□ 0.15
XRCC1P18887 AC140878.1-201ENST00000565277 250 ntBASIC15.99■□□□□ 0.15
XRCC1P18887 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.99■□□□□ 0.15
XRCC1P18887 MIR6080-201ENST00000617359 66 ntBASIC15.99■□□□□ 0.15
XRCC1P18887 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
XRCC1P18887 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.99■□□□□ 0.15
XRCC1P18887 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
XRCC1P18887 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
XRCC1P18887 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
XRCC1P18887 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
XRCC1P18887 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.99■□□□□ 0.15
XRCC1P18887 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
XRCC1P18887 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
XRCC1P18887 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.99■□□□□ 0.15
XRCC1P18887 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
XRCC1P18887 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.99■□□□□ 0.15
XRCC1P18887 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
XRCC1P18887 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
XRCC1P18887 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
XRCC1P18887 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
XRCC1P18887 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
XRCC1P18887 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
XRCC1P18887 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
XRCC1P18887 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
XRCC1P18887 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
XRCC1P18887 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.98■□□□□ 0.15
XRCC1P18887 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
XRCC1P18887 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
XRCC1P18887 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.98■□□□□ 0.15
XRCC1P18887 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.98■□□□□ 0.15
XRCC1P18887 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.98■□□□□ 0.15
XRCC1P18887 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms