Protein–RNA interactions for Protein: P03886

MT-ND1, NADH-ubiquinone oxidoreductase chain 1, humanhuman

Predictions only

Length 318 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND1P03886 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
MT-ND1P03886 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MT-ND1P03886 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.17■□□□□ 0.02
MT-ND1P03886 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MT-ND1P03886 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.17■□□□□ 0.02
MT-ND1P03886 AC009090.5-201ENST00000624886 2285 ntBASIC15.17■□□□□ 0.02
MT-ND1P03886 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MT-ND1P03886 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
MT-ND1P03886 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MT-ND1P03886 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
MT-ND1P03886 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MT-ND1P03886 CICP23-201ENST00000605013 2741 ntBASIC15.16■□□□□ 0.02
MT-ND1P03886 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
MT-ND1P03886 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MT-ND1P03886 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MT-ND1P03886 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MT-ND1P03886 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
MT-ND1P03886 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MT-ND1P03886 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.16■□□□□ 0.02
MT-ND1P03886 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
MT-ND1P03886 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
MT-ND1P03886 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MT-ND1P03886 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.16■□□□□ 0.02
MT-ND1P03886 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.16■□□□□ 0.02
MT-ND1P03886 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.16■□□□□ 0.02
MT-ND1P03886 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MT-ND1P03886 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.16■□□□□ 0.02
MT-ND1P03886 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
MT-ND1P03886 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.16■□□□□ 0.02
MT-ND1P03886 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC15.16■□□□□ 0.02
MT-ND1P03886 RNPS1P1-201ENST00000507437 918 ntBASIC15.16■□□□□ 0.02
MT-ND1P03886 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.16■□□□□ 0.02
MT-ND1P03886 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.16■□□□□ 0.02
MT-ND1P03886 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.16■□□□□ 0.02
MT-ND1P03886 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
MT-ND1P03886 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.16■□□□□ 0.02
MT-ND1P03886 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
MT-ND1P03886 AC008667.4-201ENST00000607370 168 ntBASIC15.16■□□□□ 0.02
MT-ND1P03886 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
MT-ND1P03886 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
MT-ND1P03886 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.16■□□□□ 0.02
MT-ND1P03886 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MT-ND1P03886 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.16■□□□□ 0.02
MT-ND1P03886 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.16■□□□□ 0.02
MT-ND1P03886 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MT-ND1P03886 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.16■□□□□ 0.02
MT-ND1P03886 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.16■□□□□ 0.02
MT-ND1P03886 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MT-ND1P03886 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
MT-ND1P03886 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MT-ND1P03886 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MT-ND1P03886 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MT-ND1P03886 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.15■□□□□ 0.02
MT-ND1P03886 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.15■□□□□ 0.02
MT-ND1P03886 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.15■□□□□ 0.02
MT-ND1P03886 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.15■□□□□ 0.02
MT-ND1P03886 AC105250.1-201ENST00000509378 2057 ntBASIC15.15■□□□□ 0.02
MT-ND1P03886 PCDHA3-202ENST00000532566 4594 ntBASIC15.15■□□□□ 0.02
MT-ND1P03886 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
MT-ND1P03886 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
MT-ND1P03886 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.15■□□□□ 0.02
MT-ND1P03886 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.15■□□□□ 0.02
MT-ND1P03886 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
MT-ND1P03886 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MT-ND1P03886 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
MT-ND1P03886 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
MT-ND1P03886 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MT-ND1P03886 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.15■□□□□ 0.02
MT-ND1P03886 KRT18P56-201ENST00000507275 550 ntBASIC15.15■□□□□ 0.02
MT-ND1P03886 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.15■□□□□ 0.02
MT-ND1P03886 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.15■□□□□ 0.02
MT-ND1P03886 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.15■□□□□ 0.02
MT-ND1P03886 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.15■□□□□ 0.02
MT-ND1P03886 MIR1199-201ENST00000621445 119 ntBASIC15.15■□□□□ 0.02
MT-ND1P03886 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC15.15■□□□□ 0.02
MT-ND1P03886 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.15■□□□□ 0.02
MT-ND1P03886 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
MT-ND1P03886 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.15■□□□□ 0.02
MT-ND1P03886 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
MT-ND1P03886 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.15■□□□□ 0.02
MT-ND1P03886 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MT-ND1P03886 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MT-ND1P03886 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
MT-ND1P03886 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
MT-ND1P03886 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
MT-ND1P03886 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
MT-ND1P03886 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
MT-ND1P03886 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
MT-ND1P03886 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
MT-ND1P03886 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.15■□□□□ 0.02
MT-ND1P03886 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
MT-ND1P03886 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MT-ND1P03886 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.15■□□□□ 0.02
MT-ND1P03886 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
MT-ND1P03886 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.14■□□□□ 0.01
MT-ND1P03886 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MT-ND1P03886 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
MT-ND1P03886 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MT-ND1P03886 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.14■□□□□ 0.01
MT-ND1P03886 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms