Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CACNA1FO60840 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
CACNA1FO60840 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CACNA1FO60840 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
CACNA1FO60840 ACTBP8-201ENST00000403258 1108 ntBASIC19.77■□□□□ 0.76
CACNA1FO60840 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC19.77■□□□□ 0.76
CACNA1FO60840 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC19.77■□□□□ 0.76
CACNA1FO60840 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC19.77■□□□□ 0.76
CACNA1FO60840 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CACNA1FO60840 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CACNA1FO60840 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC19.77■□□□□ 0.76
CACNA1FO60840 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CACNA1FO60840 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC19.77■□□□□ 0.76
CACNA1FO60840 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
CACNA1FO60840 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CACNA1FO60840 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CACNA1FO60840 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CACNA1FO60840 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CACNA1FO60840 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
CACNA1FO60840 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CACNA1FO60840 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CACNA1FO60840 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CACNA1FO60840 AL512384.1-201ENST00000406683 331 ntBASIC19.77■□□□□ 0.75
CACNA1FO60840 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CACNA1FO60840 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC19.77■□□□□ 0.75
CACNA1FO60840 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC19.77■□□□□ 0.75
CACNA1FO60840 AC012441.1-201ENST00000446669 685 ntBASIC19.77■□□□□ 0.75
CACNA1FO60840 AC068587.3-201ENST00000526613 355 ntBASIC19.77■□□□□ 0.75
CACNA1FO60840 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC19.77■□□□□ 0.75
CACNA1FO60840 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC19.77■□□□□ 0.75
CACNA1FO60840 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC19.77■□□□□ 0.75
CACNA1FO60840 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC19.77■□□□□ 0.75
CACNA1FO60840 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
CACNA1FO60840 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
CACNA1FO60840 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CACNA1FO60840 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CACNA1FO60840 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CACNA1FO60840 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
CACNA1FO60840 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC19.76■□□□□ 0.75
CACNA1FO60840 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CACNA1FO60840 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC19.76■□□□□ 0.75
CACNA1FO60840 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CACNA1FO60840 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CACNA1FO60840 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CACNA1FO60840 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC19.76■□□□□ 0.75
CACNA1FO60840 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC19.76■□□□□ 0.75
CACNA1FO60840 CU634019.7-201ENST00000624153 1185 ntBASIC19.76■□□□□ 0.75
CACNA1FO60840 FP236241.2-201ENST00000624906 1185 ntBASIC19.76■□□□□ 0.75
CACNA1FO60840 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CACNA1FO60840 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC19.76■□□□□ 0.75
CACNA1FO60840 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CACNA1FO60840 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CACNA1FO60840 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
CACNA1FO60840 CICP13-201ENST00000422015 2789 ntBASIC19.76■□□□□ 0.75
CACNA1FO60840 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC19.75■□□□□ 0.75
CACNA1FO60840 SUN1-204ENST00000403868 978 ntTSL 2 BASIC19.75■□□□□ 0.75
CACNA1FO60840 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC19.75■□□□□ 0.75
CACNA1FO60840 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
CACNA1FO60840 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC19.75■□□□□ 0.75
CACNA1FO60840 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC19.75■□□□□ 0.75
CACNA1FO60840 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CACNA1FO60840 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC19.75■□□□□ 0.75
CACNA1FO60840 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC19.75■□□□□ 0.75
CACNA1FO60840 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
CACNA1FO60840 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 AC020658.6-201ENST00000623564 1870 ntBASIC19.75■□□□□ 0.75
CACNA1FO60840 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 TP73-213ENST00000604479 1623 ntTSL 5 BASIC19.75■□□□□ 0.75
CACNA1FO60840 AMT-224ENST00000635808 1610 ntTSL 5 BASIC19.75■□□□□ 0.75
CACNA1FO60840 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
CACNA1FO60840 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.75■□□□□ 0.75
CACNA1FO60840 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC19.75■□□□□ 0.75
CACNA1FO60840 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 AC092850.2-201ENST00000623821 2697 ntBASIC19.75■□□□□ 0.75
CACNA1FO60840 AC005229.1-201ENST00000392885 409 ntBASIC19.75■□□□□ 0.75
CACNA1FO60840 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 GHSR-202ENST00000427970 912 ntBASIC19.75■□□□□ 0.75
CACNA1FO60840 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC19.75■□□□□ 0.75
CACNA1FO60840 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC19.75■□□□□ 0.75
CACNA1FO60840 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CACNA1FO60840 REXO1L4P-201ENST00000605109 1937 ntBASIC19.75■□□□□ 0.75
CACNA1FO60840 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms