Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 AC124067.4-201ENST00000519691 2379 ntBASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 AC016700.1-201ENST00000429424 312 ntBASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 IMP3P2-201ENST00000489760 475 ntBASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 HCG18-245ENST00000602550 559 ntTSL 4 BASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 POM121L10P-201ENST00000436994 1285 ntBASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 UPF3AP2-201ENST00000457924 1132 ntBASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 AC022217.1-201ENST00000521069 738 ntBASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 PPY2P-201ENST00000582808 702 ntBASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 AC138649.2-201ENST00000615886 705 ntBASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 AP001505.2-201ENST00000616815 443 ntBASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 AC132938.4-201ENST00000623835 848 ntBASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHANK3Q9BYB0 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 AC011477.6-201ENST00000604980 1927 ntBASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 SNX21-203ENST00000372541 771 ntTSL 2 BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 RGS5-214ENST00000429865 754 ntTSL 3 BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 RN7SL48P-201ENST00000579283 293 ntBASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHANK3Q9BYB0 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
SHANK3Q9BYB0 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 AC022211.2-201ENST00000585075 2527 ntBASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 IGF1-203ENST00000392904 761 ntTSL 5 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 MIR4783-201ENST00000580343 82 ntBASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHANK3Q9BYB0 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 AL139094.1-201ENST00000405549 1188 ntBASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC20.19■□□□□ 0.82
SHANK3Q9BYB0 AC013355.1-201ENST00000562625 723 ntBASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms