Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 RPL37AP1-201ENST00000412502 279 ntBASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 AC241585.1-201ENST00000433527 519 ntBASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 AC243562.2-201ENST00000561247 970 ntBASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 AC011467.4-201ENST00000594891 528 ntBASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 CYP4F24P-201ENST00000586049 1580 ntBASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 AC100757.3-201ENST00000622361 1406 ntBASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 AC132872.4-202ENST00000622924 2756 ntBASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 AL590560.3-201ENST00000623350 461 ntBASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PTCHD1Q96NR3 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 MIR648-201ENST00000385046 94 ntBASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 AC004987.2-201ENST00000395959 1148 ntBASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 HNRNPA1P40-201ENST00000426371 1278 ntBASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 INGX-202ENST00000489074 768 ntBASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 TEX28P1-201ENST00000613479 1221 ntBASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 TEX28P2-201ENST00000617764 1221 ntBASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 CICP6-201ENST00000457191 2729 ntBASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.1■□□□□ 0.01
PTCHD1Q96NR3 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms