Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHKBP1Q8TBC3 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHKBP1Q8TBC3 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.8■□□□□ 0.28
SHKBP1Q8TBC3 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
SHKBP1Q8TBC3 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
SHKBP1Q8TBC3 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SHKBP1Q8TBC3 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHKBP1Q8TBC3 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHKBP1Q8TBC3 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 FO393414.2-201ENST00000405153 598 ntBASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 AC098850.1-201ENST00000419919 790 ntBASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 ATP5G2P4-201ENST00000442175 420 ntBASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 MYCLP2-201ENST00000449268 967 ntBASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 GPR53P-205ENST00000457298 1084 ntBASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHKBP1Q8TBC3 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 ELK1P1-201ENST00000485699 580 ntBASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 IGHV3-71-201ENST00000523324 359 ntBASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 HILS1-202ENST00000545329 423 ntBASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 AC123567.1-201ENST00000548294 1261 ntBASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 CTBP2P3-201ENST00000585629 1255 ntBASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHKBP1Q8TBC3 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms