Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC079781.4-201ENST00000641908 219 ntBASIC14.24□□□□□ -0.13
SKA3Q8IX90 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 RBPMS2P1-201ENST00000437762 623 ntBASIC14.23□□□□□ -0.13
SKA3Q8IX90 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 AC023141.5-201ENST00000458585 616 ntBASIC14.23□□□□□ -0.13
SKA3Q8IX90 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
SKA3Q8IX90 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SKA3Q8IX90 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 GOLGA6L17P-202ENST00000614358 1398 ntBASIC14.22□□□□□ -0.13
SKA3Q8IX90 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SKA3Q8IX90 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SKA3Q8IX90 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SKA3Q8IX90 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SKA3Q8IX90 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SKA3Q8IX90 MIR648-201ENST00000385046 94 ntBASIC14.22□□□□□ -0.13
SKA3Q8IX90 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SKA3Q8IX90 GPS2P2-201ENST00000430745 888 ntBASIC14.22□□□□□ -0.13
SKA3Q8IX90 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 ALG1L8P-201ENST00000533887 760 ntBASIC14.22□□□□□ -0.13
SKA3Q8IX90 RARRES2P9-201ENST00000565168 469 ntBASIC14.22□□□□□ -0.13
SKA3Q8IX90 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 AC027612.4-201ENST00000605371 583 ntBASIC14.22□□□□□ -0.13
SKA3Q8IX90 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 AC009093.7-201ENST00000623853 1223 ntBASIC14.22□□□□□ -0.13
SKA3Q8IX90 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SKA3Q8IX90 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SKA3Q8IX90 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SKA3Q8IX90 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
SKA3Q8IX90 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SKA3Q8IX90 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SKA3Q8IX90 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms