Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC11.24□□□□□ -0.61
PRKDCP78527 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC11.24□□□□□ -0.61
PRKDCP78527 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC11.24□□□□□ -0.61
PRKDCP78527 AL132780.4-201ENST00000624870 1135 ntBASIC11.24□□□□□ -0.61
PRKDCP78527 AL645728.2-202ENST00000641679 227 ntBASIC11.24□□□□□ -0.61
PRKDCP78527 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
PRKDCP78527 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC11.24□□□□□ -0.61
PRKDCP78527 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 COX20P1-201ENST00000366529 357 ntBASIC11.24□□□□□ -0.61
PRKDCP78527 OR2K2-202ENST00000374428 1038 ntBASIC11.24□□□□□ -0.61
PRKDCP78527 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC11.24□□□□□ -0.61
PRKDCP78527 AC027237.1-201ENST00000560942 655 ntBASIC11.24□□□□□ -0.61
PRKDCP78527 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC11.24□□□□□ -0.61
PRKDCP78527 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
PRKDCP78527 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
PRKDCP78527 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC11.24□□□□□ -0.61
PRKDCP78527 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC11.24□□□□□ -0.61
PRKDCP78527 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC11.24□□□□□ -0.61
PRKDCP78527 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC11.24□□□□□ -0.61
PRKDCP78527 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC11.24□□□□□ -0.61
PRKDCP78527 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC11.24□□□□□ -0.61
PRKDCP78527 RNMTL1P1-201ENST00000454103 560 ntBASIC11.24□□□□□ -0.61
PRKDCP78527 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
PRKDCP78527 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC11.23□□□□□ -0.61
PRKDCP78527 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC11.23□□□□□ -0.61
PRKDCP78527 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC11.23□□□□□ -0.61
PRKDCP78527 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC11.23□□□□□ -0.61
PRKDCP78527 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC11.23□□□□□ -0.61
PRKDCP78527 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC11.23□□□□□ -0.61
PRKDCP78527 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
PRKDCP78527 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC11.23□□□□□ -0.61
PRKDCP78527 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC11.23□□□□□ -0.61
PRKDCP78527 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC11.23□□□□□ -0.61
PRKDCP78527 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC11.23□□□□□ -0.61
PRKDCP78527 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC11.23□□□□□ -0.61
PRKDCP78527 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC11.23□□□□□ -0.61
PRKDCP78527 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC11.23□□□□□ -0.61
PRKDCP78527 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC11.23□□□□□ -0.61
PRKDCP78527 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC11.23□□□□□ -0.61
PRKDCP78527 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC11.23□□□□□ -0.61
PRKDCP78527 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
PRKDCP78527 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
PRKDCP78527 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 AL138688.1-201ENST00000624851 1594 ntBASIC11.23□□□□□ -0.61
PRKDCP78527 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC11.23□□□□□ -0.61
PRKDCP78527 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC11.23□□□□□ -0.61
PRKDCP78527 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
PRKDCP78527 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC11.23□□□□□ -0.61
PRKDCP78527 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC11.23□□□□□ -0.61
PRKDCP78527 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
PRKDCP78527 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC11.22□□□□□ -0.61
PRKDCP78527 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
PRKDCP78527 AQP7P5-201ENST00000428759 1049 ntBASIC11.22□□□□□ -0.61
PRKDCP78527 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC11.22□□□□□ -0.61
PRKDCP78527 AQP7P4-201ENST00000447083 1042 ntBASIC11.22□□□□□ -0.61
PRKDCP78527 AQP7P2-201ENST00000453967 1041 ntBASIC11.22□□□□□ -0.61
PRKDCP78527 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 AQP7P3-201ENST00000624547 1041 ntBASIC11.22□□□□□ -0.61
PRKDCP78527 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC11.22□□□□□ -0.61
PRKDCP78527 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
PRKDCP78527 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC11.22□□□□□ -0.61
PRKDCP78527 TP53-221ENST00000615910 1149 ntTSL 5 BASIC11.22□□□□□ -0.61
PRKDCP78527 LINC00431-202ENST00000636375 159 ntBASIC11.22□□□□□ -0.61
PRKDCP78527 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC11.22□□□□□ -0.61
PRKDCP78527 AMT-233ENST00000636522 1620 ntTSL 2 BASIC11.22□□□□□ -0.61
PRKDCP78527 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms