Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PKNOX1P55347 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PKNOX1P55347 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PKNOX1P55347 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PKNOX1P55347 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PKNOX1P55347 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PKNOX1P55347 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.77■□□□□ 0.12
PKNOX1P55347 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC15.77■□□□□ 0.12
PKNOX1P55347 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PKNOX1P55347 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.77■□□□□ 0.12
PKNOX1P55347 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.77■□□□□ 0.12
PKNOX1P55347 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.77■□□□□ 0.11
PKNOX1P55347 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.77■□□□□ 0.11
PKNOX1P55347 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PKNOX1P55347 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PKNOX1P55347 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PKNOX1P55347 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PKNOX1P55347 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PKNOX1P55347 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
PKNOX1P55347 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.77■□□□□ 0.11
PKNOX1P55347 AC073439.1-201ENST00000624121 1774 ntBASIC15.77■□□□□ 0.11
PKNOX1P55347 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PKNOX1P55347 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.77■□□□□ 0.11
PKNOX1P55347 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
PKNOX1P55347 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
PKNOX1P55347 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PKNOX1P55347 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.77■□□□□ 0.11
PKNOX1P55347 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
PKNOX1P55347 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
PKNOX1P55347 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 AC011477.6-201ENST00000604980 1927 ntBASIC15.76■□□□□ 0.11
PKNOX1P55347 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
PKNOX1P55347 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.76■□□□□ 0.11
PKNOX1P55347 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.76■□□□□ 0.11
PKNOX1P55347 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.76■□□□□ 0.11
PKNOX1P55347 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.76■□□□□ 0.11
PKNOX1P55347 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.76■□□□□ 0.11
PKNOX1P55347 AC002347.1-201ENST00000569543 541 ntBASIC15.76■□□□□ 0.11
PKNOX1P55347 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.76■□□□□ 0.11
PKNOX1P55347 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.76■□□□□ 0.11
PKNOX1P55347 AL589702.1-201ENST00000641229 1509 ntBASIC15.76■□□□□ 0.11
PKNOX1P55347 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.76■□□□□ 0.11
PKNOX1P55347 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
PKNOX1P55347 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.76■□□□□ 0.11
PKNOX1P55347 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.76■□□□□ 0.11
PKNOX1P55347 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.76■□□□□ 0.11
PKNOX1P55347 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PKNOX1P55347 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.76■□□□□ 0.11
PKNOX1P55347 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PKNOX1P55347 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.75■□□□□ 0.11
PKNOX1P55347 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
PKNOX1P55347 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PKNOX1P55347 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PKNOX1P55347 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
PKNOX1P55347 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PKNOX1P55347 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
PKNOX1P55347 AC006486.2-201ENST00000624246 2199 ntBASIC15.75■□□□□ 0.11
PKNOX1P55347 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PKNOX1P55347 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PKNOX1P55347 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PKNOX1P55347 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PKNOX1P55347 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.75■□□□□ 0.11
PKNOX1P55347 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
PKNOX1P55347 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
PKNOX1P55347 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.75■□□□□ 0.11
PKNOX1P55347 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC15.75■□□□□ 0.11
PKNOX1P55347 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
PKNOX1P55347 SLC25A6P4-201ENST00000586535 553 ntBASIC15.75■□□□□ 0.11
PKNOX1P55347 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC15.75■□□□□ 0.11
PKNOX1P55347 MIR4321-201ENST00000592276 80 ntBASIC15.75■□□□□ 0.11
PKNOX1P55347 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.75■□□□□ 0.11
PKNOX1P55347 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PKNOX1P55347 SNX18-202ENST00000343017 3140 ntBASIC15.75■□□□□ 0.11
PKNOX1P55347 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
PKNOX1P55347 AC025580.3-201ENST00000617932 1424 ntBASIC15.75■□□□□ 0.11
PKNOX1P55347 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms