Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC15.78■□□□□ 0.12
LIMK1P53667 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIMK1P53667 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIMK1P53667 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.77■□□□□ 0.12
LIMK1P53667 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.77■□□□□ 0.12
LIMK1P53667 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LIMK1P53667 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIMK1P53667 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIMK1P53667 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIMK1P53667 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.77■□□□□ 0.12
LIMK1P53667 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
LIMK1P53667 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LIMK1P53667 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LIMK1P53667 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.77■□□□□ 0.12
LIMK1P53667 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
LIMK1P53667 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.12
LIMK1P53667 FO393414.2-201ENST00000405153 598 ntBASIC15.77■□□□□ 0.12
LIMK1P53667 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LIMK1P53667 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LIMK1P53667 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC15.77■□□□□ 0.12
LIMK1P53667 PTP4A1P2-201ENST00000546033 454 ntBASIC15.77■□□□□ 0.12
LIMK1P53667 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.77■□□□□ 0.12
LIMK1P53667 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC15.77■□□□□ 0.12
LIMK1P53667 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LIMK1P53667 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LIMK1P53667 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
LIMK1P53667 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
LIMK1P53667 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LIMK1P53667 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LIMK1P53667 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LIMK1P53667 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.77■□□□□ 0.11
LIMK1P53667 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LIMK1P53667 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
LIMK1P53667 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
LIMK1P53667 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LIMK1P53667 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LIMK1P53667 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 AC078925.2-201ENST00000624013 1973 ntBASIC15.76■□□□□ 0.11
LIMK1P53667 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.76■□□□□ 0.11
LIMK1P53667 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.76■□□□□ 0.11
LIMK1P53667 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC15.76■□□□□ 0.11
LIMK1P53667 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.76■□□□□ 0.11
LIMK1P53667 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.76■□□□□ 0.11
LIMK1P53667 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
LIMK1P53667 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
LIMK1P53667 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
LIMK1P53667 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 BCRP2-202ENST00000447763 634 ntBASIC15.76■□□□□ 0.11
LIMK1P53667 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
LIMK1P53667 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.76■□□□□ 0.11
LIMK1P53667 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC15.76■□□□□ 0.11
LIMK1P53667 BCRP6-201ENST00000510112 632 ntBASIC15.76■□□□□ 0.11
LIMK1P53667 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.76■□□□□ 0.11
LIMK1P53667 BCRP7-201ENST00000511549 544 ntBASIC15.76■□□□□ 0.11
LIMK1P53667 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.76■□□□□ 0.11
LIMK1P53667 ENPP7P5-201ENST00000541031 1031 ntBASIC15.76■□□□□ 0.11
LIMK1P53667 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC15.76■□□□□ 0.11
LIMK1P53667 DUX4L45-201ENST00000566406 1057 ntBASIC15.76■□□□□ 0.11
LIMK1P53667 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.76■□□□□ 0.11
LIMK1P53667 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC15.76■□□□□ 0.11
LIMK1P53667 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.76■□□□□ 0.11
LIMK1P53667 AL391069.4-201ENST00000609583 481 ntBASIC15.76■□□□□ 0.11
LIMK1P53667 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
LIMK1P53667 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.76■□□□□ 0.11
LIMK1P53667 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
LIMK1P53667 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
LIMK1P53667 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.76■□□□□ 0.11
LIMK1P53667 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 LINC00554-201ENST00000564841 3011 ntBASIC15.76■□□□□ 0.11
LIMK1P53667 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LIMK1P53667 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
LIMK1P53667 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms