Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXD13P35453 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXD13P35453 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.4■□□□□ 0.38
HOXD13P35453 AC073347.1-201ENST00000421633 2643 ntBASIC17.4■□□□□ 0.38
HOXD13P35453 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.4■□□□□ 0.38
HOXD13P35453 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXD13P35453 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HOXD13P35453 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXD13P35453 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXD13P35453 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXD13P35453 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXD13P35453 MIR943-201ENST00000401286 94 ntBASIC17.4■□□□□ 0.38
HOXD13P35453 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.4■□□□□ 0.38
HOXD13P35453 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXD13P35453 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HOXD13P35453 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.4■□□□□ 0.38
HOXD13P35453 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXD13P35453 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXD13P35453 AC067863.1-201ENST00000494933 530 ntBASIC17.4■□□□□ 0.38
HOXD13P35453 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.4■□□□□ 0.38
HOXD13P35453 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.4■□□□□ 0.38
HOXD13P35453 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXD13P35453 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.4■□□□□ 0.38
HOXD13P35453 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HOXD13P35453 AL158211.3-201ENST00000607385 239 ntBASIC17.4■□□□□ 0.38
HOXD13P35453 AC093512.1-201ENST00000617969 520 ntBASIC17.4■□□□□ 0.38
HOXD13P35453 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
HOXD13P35453 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC17.4■□□□□ 0.38
HOXD13P35453 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXD13P35453 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXD13P35453 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXD13P35453 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXD13P35453 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXD13P35453 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
HOXD13P35453 AC127383.1-201ENST00000444697 1800 ntBASIC17.4■□□□□ 0.38
HOXD13P35453 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
HOXD13P35453 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
HOXD13P35453 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXD13P35453 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXD13P35453 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
HOXD13P35453 Z97205.2-201ENST00000564697 1639 ntBASIC17.39■□□□□ 0.38
HOXD13P35453 AC100757.3-201ENST00000622361 1406 ntBASIC17.39■□□□□ 0.38
HOXD13P35453 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
HOXD13P35453 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
HOXD13P35453 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC17.39■□□□□ 0.37
HOXD13P35453 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.39■□□□□ 0.37
HOXD13P35453 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
HOXD13P35453 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
HOXD13P35453 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
HOXD13P35453 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.39■□□□□ 0.37
HOXD13P35453 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
HOXD13P35453 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.39■□□□□ 0.37
HOXD13P35453 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.39■□□□□ 0.37
HOXD13P35453 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.39■□□□□ 0.37
HOXD13P35453 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 KRT18P64-201ENST00000434946 1219 ntBASIC17.39■□□□□ 0.37
HOXD13P35453 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.39■□□□□ 0.37
HOXD13P35453 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 AC106028.4-201ENST00000614509 607 ntBASIC17.39■□□□□ 0.37
HOXD13P35453 HYMAI-201ENST00000635591 3347 ntBASIC17.39■□□□□ 0.37
HOXD13P35453 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
HOXD13P35453 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.39■□□□□ 0.37
HOXD13P35453 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
HOXD13P35453 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.39■□□□□ 0.37
HOXD13P35453 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.39■□□□□ 0.37
HOXD13P35453 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXD13P35453 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.39■□□□□ 0.37
HOXD13P35453 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HOXD13P35453 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.38■□□□□ 0.37
HOXD13P35453 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXD13P35453 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.38■□□□□ 0.37
HOXD13P35453 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXD13P35453 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.38■□□□□ 0.37
HOXD13P35453 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXD13P35453 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC17.38■□□□□ 0.37
HOXD13P35453 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.38■□□□□ 0.37
HOXD13P35453 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HOXD13P35453 AC126177.1-201ENST00000547829 2218 ntBASIC17.38■□□□□ 0.37
HOXD13P35453 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXD13P35453 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
HOXD13P35453 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXD13P35453 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HOXD13P35453 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms