Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
HOXC9P31274 MIR4313-201ENST00000580760 101 ntBASIC20.96■□□□□ 0.95
HOXC9P31274 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC9P31274 AC093813.1-201ENST00000605066 256 ntBASIC20.96■□□□□ 0.95
HOXC9P31274 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC20.96■□□□□ 0.95
HOXC9P31274 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC20.96■□□□□ 0.95
HOXC9P31274 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC9P31274 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC9P31274 PGR-209ENST00000617858 2816 ntTSL 5 BASIC20.96■□□□□ 0.95
HOXC9P31274 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
HOXC9P31274 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC20.95■□□□□ 0.94
HOXC9P31274 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC9P31274 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC9P31274 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC9P31274 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC9P31274 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC9P31274 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC20.95■□□□□ 0.94
HOXC9P31274 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC20.95■□□□□ 0.94
HOXC9P31274 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC20.95■□□□□ 0.94
HOXC9P31274 AC108725.1-201ENST00000495472 409 ntBASIC20.95■□□□□ 0.94
HOXC9P31274 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC20.95■□□□□ 0.94
HOXC9P31274 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC9P31274 MIR6787-201ENST00000616675 61 ntBASIC20.95■□□□□ 0.94
HOXC9P31274 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC9P31274 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
HOXC9P31274 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
HOXC9P31274 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC9P31274 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC9P31274 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC9P31274 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC9P31274 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
HOXC9P31274 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
HOXC9P31274 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
HOXC9P31274 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC9P31274 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC9P31274 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC9P31274 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC9P31274 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC9P31274 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC9P31274 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC20.94■□□□□ 0.94
HOXC9P31274 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC20.94■□□□□ 0.94
HOXC9P31274 RHOXF1P1-202ENST00000635473 501 ntBASIC20.94■□□□□ 0.94
HOXC9P31274 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HOXC9P31274 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC9P31274 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC9P31274 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC9P31274 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
HOXC9P31274 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC20.94■□□□□ 0.94
HOXC9P31274 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC9P31274 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC20.94■□□□□ 0.94
HOXC9P31274 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.94■□□□□ 0.94
HOXC9P31274 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC9P31274 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC9P31274 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC9P31274 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC9P31274 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC9P31274 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC9P31274 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC9P31274 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
HOXC9P31274 FLII-221ENST00000578558 2377 ntTSL 5 BASIC20.93■□□□□ 0.94
HOXC9P31274 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC9P31274 ZBTB12BP-201ENST00000314232 1122 ntBASIC20.93■□□□□ 0.94
HOXC9P31274 APOC3-202ENST00000375345 604 ntTSL 5 BASIC20.93■□□□□ 0.94
HOXC9P31274 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC20.93■□□□□ 0.94
HOXC9P31274 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
HOXC9P31274 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
HOXC9P31274 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC20.93■□□□□ 0.94
HOXC9P31274 AP001582.1-201ENST00000525856 295 ntBASIC20.93■□□□□ 0.94
HOXC9P31274 RPL8-205ENST00000527914 551 ntTSL 3 BASIC20.93■□□□□ 0.94
HOXC9P31274 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC9P31274 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC20.93■□□□□ 0.94
HOXC9P31274 AC009542.2-202ENST00000619004 1067 ntBASIC20.93■□□□□ 0.94
HOXC9P31274 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC20.93■□□□□ 0.94
HOXC9P31274 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC9P31274 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC9P31274 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC9P31274 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC9P31274 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC9P31274 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC20.93■□□□□ 0.94
HOXC9P31274 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC9P31274 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.93■□□□□ 0.94
HOXC9P31274 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC9P31274 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC9P31274 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC9P31274 SP100-205ENST00000409824 1802 ntTSL 5 BASIC20.92■□□□□ 0.94
HOXC9P31274 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
HOXC9P31274 POLL-217ENST00000628479 1953 ntTSL 5 BASIC20.92■□□□□ 0.94
HOXC9P31274 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC20.92■□□□□ 0.94
HOXC9P31274 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC9P31274 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC9P31274 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC20.92■□□□□ 0.94
HOXC9P31274 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC9P31274 BRWD1P1-201ENST00000401091 371 ntBASIC20.92■□□□□ 0.94
HOXC9P31274 CNN2P8-201ENST00000421872 913 ntBASIC20.92■□□□□ 0.94
HOXC9P31274 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC20.92■□□□□ 0.94
HOXC9P31274 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC9P31274 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC9P31274 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC20.92■□□□□ 0.94
HOXC9P31274 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC20.92■□□□□ 0.94
HOXC9P31274 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms