Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
COL5A3P25940 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A3P25940 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A3P25940 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A3P25940 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A3P25940 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
COL5A3P25940 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC19.69■□□□□ 0.74
COL5A3P25940 PARP8-206ENST00000503665 572 ntTSL 4 BASIC19.69■□□□□ 0.74
COL5A3P25940 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC19.69■□□□□ 0.74
COL5A3P25940 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC19.69■□□□□ 0.74
COL5A3P25940 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC19.69■□□□□ 0.74
COL5A3P25940 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC19.69■□□□□ 0.74
COL5A3P25940 FOS-206ENST00000555347 1280 ntTSL 2 BASIC19.69■□□□□ 0.74
COL5A3P25940 NAT9-222ENST00000583476 583 ntTSL 3 BASIC19.69■□□□□ 0.74
COL5A3P25940 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC19.69■□□□□ 0.74
COL5A3P25940 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
COL5A3P25940 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
COL5A3P25940 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
COL5A3P25940 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC19.69■□□□□ 0.74
COL5A3P25940 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC19.69■□□□□ 0.74
COL5A3P25940 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A3P25940 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A3P25940 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC19.69■□□□□ 0.74
COL5A3P25940 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC19.69■□□□□ 0.74
COL5A3P25940 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A3P25940 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A3P25940 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL5A3P25940 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC19.68■□□□□ 0.74
COL5A3P25940 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
COL5A3P25940 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A3P25940 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A3P25940 NKAIN1P1-201ENST00000435754 582 ntBASIC19.68■□□□□ 0.74
COL5A3P25940 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC19.68■□□□□ 0.74
COL5A3P25940 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A3P25940 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A3P25940 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC19.68■□□□□ 0.74
COL5A3P25940 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC19.68■□□□□ 0.74
COL5A3P25940 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC19.68■□□□□ 0.74
COL5A3P25940 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC19.68■□□□□ 0.74
COL5A3P25940 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A3P25940 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A3P25940 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A3P25940 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A3P25940 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL5A3P25940 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.68■□□□□ 0.74
COL5A3P25940 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC19.68■□□□□ 0.74
COL5A3P25940 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A3P25940 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A3P25940 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A3P25940 AC124067.4-201ENST00000519691 2379 ntBASIC19.68■□□□□ 0.74
COL5A3P25940 LRRC59-203ENST00000576448 1531 ntBASIC19.68■□□□□ 0.74
COL5A3P25940 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A3P25940 GHSR-202ENST00000427970 912 ntBASIC19.68■□□□□ 0.74
COL5A3P25940 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC19.68■□□□□ 0.74
COL5A3P25940 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC19.68■□□□□ 0.74
COL5A3P25940 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC19.68■□□□□ 0.74
COL5A3P25940 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC19.68■□□□□ 0.74
COL5A3P25940 AC025181.2-201ENST00000606994 802 ntBASIC19.68■□□□□ 0.74
COL5A3P25940 ZACNP1-201ENST00000612259 710 ntBASIC19.68■□□□□ 0.74
COL5A3P25940 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC19.68■□□□□ 0.74
COL5A3P25940 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC19.68■□□□□ 0.74
COL5A3P25940 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
COL5A3P25940 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A3P25940 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A3P25940 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A3P25940 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A3P25940 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A3P25940 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC19.67■□□□□ 0.74
COL5A3P25940 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A3P25940 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A3P25940 NDUFAB1P1-201ENST00000404262 460 ntBASIC19.67■□□□□ 0.74
COL5A3P25940 GGCT-203ENST00000409144 836 ntTSL 2 BASIC19.67■□□□□ 0.74
COL5A3P25940 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC19.67■□□□□ 0.74
COL5A3P25940 AC007274.2-201ENST00000421675 662 ntBASIC19.67■□□□□ 0.74
COL5A3P25940 PTPA-218ENST00000435132 618 ntTSL 2 BASIC19.67■□□□□ 0.74
COL5A3P25940 HIST2H2BB-201ENST00000449108 381 ntBASIC19.67■□□□□ 0.74
COL5A3P25940 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC19.67■□□□□ 0.74
COL5A3P25940 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A3P25940 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
COL5A3P25940 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
COL5A3P25940 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC19.67■□□□□ 0.74
COL5A3P25940 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A3P25940 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A3P25940 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.67■□□□□ 0.74
COL5A3P25940 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A3P25940 AL158070.2-201ENST00000623713 1621 ntBASIC19.67■□□□□ 0.74
COL5A3P25940 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A3P25940 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL5A3P25940 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL5A3P25940 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.66■□□□□ 0.74
COL5A3P25940 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC19.66■□□□□ 0.74
COL5A3P25940 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL5A3P25940 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC19.66■□□□□ 0.74
COL5A3P25940 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms