Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL9A1P20849 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.33■□□□□ 0.21
COL9A1P20849 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL9A1P20849 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL9A1P20849 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL9A1P20849 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC16.33■□□□□ 0.2
COL9A1P20849 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
COL9A1P20849 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL9A1P20849 BAATP1-201ENST00000412284 1225 ntBASIC16.33■□□□□ 0.2
COL9A1P20849 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC16.33■□□□□ 0.2
COL9A1P20849 APOA2-204ENST00000464492 530 ntTSL 3 BASIC16.33■□□□□ 0.2
COL9A1P20849 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.33■□□□□ 0.2
COL9A1P20849 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
COL9A1P20849 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC16.33■□□□□ 0.2
COL9A1P20849 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.33■□□□□ 0.2
COL9A1P20849 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC16.33■□□□□ 0.2
COL9A1P20849 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
COL9A1P20849 RN7SL596P-201ENST00000582123 288 ntBASIC16.33■□□□□ 0.2
COL9A1P20849 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
COL9A1P20849 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.33■□□□□ 0.2
COL9A1P20849 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL9A1P20849 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC16.33■□□□□ 0.2
COL9A1P20849 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL9A1P20849 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL9A1P20849 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL9A1P20849 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL9A1P20849 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.33■□□□□ 0.2
COL9A1P20849 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.33■□□□□ 0.2
COL9A1P20849 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL9A1P20849 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
COL9A1P20849 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL9A1P20849 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL9A1P20849 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC16.33■□□□□ 0.2
COL9A1P20849 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL9A1P20849 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL9A1P20849 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
COL9A1P20849 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL9A1P20849 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL9A1P20849 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.33■□□□□ 0.2
COL9A1P20849 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.33■□□□□ 0.2
COL9A1P20849 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.33■□□□□ 0.2
COL9A1P20849 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.33■□□□□ 0.2
COL9A1P20849 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL9A1P20849 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
COL9A1P20849 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL9A1P20849 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.32■□□□□ 0.2
COL9A1P20849 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL9A1P20849 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL9A1P20849 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
COL9A1P20849 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
COL9A1P20849 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
COL9A1P20849 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.32■□□□□ 0.2
COL9A1P20849 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL9A1P20849 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
COL9A1P20849 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC16.32■□□□□ 0.2
COL9A1P20849 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC16.32■□□□□ 0.2
COL9A1P20849 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL9A1P20849 AL136982.4-201ENST00000437689 1740 ntBASIC16.32■□□□□ 0.2
COL9A1P20849 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC16.32■□□□□ 0.2
COL9A1P20849 RN7SL11P-201ENST00000471305 293 ntBASIC16.32■□□□□ 0.2
COL9A1P20849 ITGB5-AS1-201ENST00000495917 460 ntTSL 3 BASIC16.32■□□□□ 0.2
COL9A1P20849 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL9A1P20849 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL9A1P20849 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.32■□□□□ 0.2
COL9A1P20849 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL9A1P20849 ENPP7P5-201ENST00000541031 1031 ntBASIC16.32■□□□□ 0.2
COL9A1P20849 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
COL9A1P20849 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.32■□□□□ 0.2
COL9A1P20849 AL359711.2-201ENST00000563105 872 ntBASIC16.32■□□□□ 0.2
COL9A1P20849 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL9A1P20849 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
COL9A1P20849 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL9A1P20849 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
COL9A1P20849 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL9A1P20849 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL9A1P20849 AC040160.2-201ENST00000623816 1675 ntBASIC16.31■□□□□ 0.2
COL9A1P20849 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL9A1P20849 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
COL9A1P20849 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.31■□□□□ 0.2
COL9A1P20849 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL9A1P20849 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL9A1P20849 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL9A1P20849 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.31■□□□□ 0.2
COL9A1P20849 PSAT1P2-201ENST00000426107 972 ntBASIC16.31■□□□□ 0.2
COL9A1P20849 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.31■□□□□ 0.2
COL9A1P20849 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.31■□□□□ 0.2
COL9A1P20849 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC16.31■□□□□ 0.2
COL9A1P20849 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.31■□□□□ 0.2
COL9A1P20849 RPSAP36-202ENST00000494591 1261 ntBASIC16.31■□□□□ 0.2
COL9A1P20849 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.31■□□□□ 0.2
COL9A1P20849 AHRR-211ENST00000515206 462 ntTSL 5 BASIC16.31■□□□□ 0.2
COL9A1P20849 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC16.31■□□□□ 0.2
COL9A1P20849 ACR-203ENST00000529621 708 ntTSL 5 BASIC16.31■□□□□ 0.2
COL9A1P20849 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
COL9A1P20849 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
COL9A1P20849 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC16.31■□□□□ 0.2
COL9A1P20849 AC009712.1-201ENST00000564938 316 ntBASIC16.31■□□□□ 0.2
COL9A1P20849 AL022344.2-201ENST00000568976 968 ntBASIC16.31■□□□□ 0.2
COL9A1P20849 AC132192.2-201ENST00000596206 1147 ntBASIC16.31■□□□□ 0.2
COL9A1P20849 WT1-AS_6.1-201ENST00000614919 121 ntBASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms