Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 AP3S2-216ENST00000617003 1561 ntBASIC16.03■□□□□ 0.16
XRCC1P18887 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
XRCC1P18887 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.03■□□□□ 0.16
XRCC1P18887 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
XRCC1P18887 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
XRCC1P18887 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.03■□□□□ 0.16
XRCC1P18887 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
XRCC1P18887 FOXO1B-201ENST00000504678 1527 ntBASIC16.03■□□□□ 0.16
XRCC1P18887 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
XRCC1P18887 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
XRCC1P18887 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
XRCC1P18887 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
XRCC1P18887 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
XRCC1P18887 GGT3P-204ENST00000453783 1664 ntBASIC16.02■□□□□ 0.16
XRCC1P18887 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
XRCC1P18887 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
XRCC1P18887 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.02■□□□□ 0.16
XRCC1P18887 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
XRCC1P18887 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.02■□□□□ 0.16
XRCC1P18887 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
XRCC1P18887 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
XRCC1P18887 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.02■□□□□ 0.16
XRCC1P18887 AC008677.1-201ENST00000519230 1561 ntBASIC16.02■□□□□ 0.16
XRCC1P18887 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.02■□□□□ 0.16
XRCC1P18887 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
XRCC1P18887 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
XRCC1P18887 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
XRCC1P18887 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
XRCC1P18887 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.02■□□□□ 0.16
XRCC1P18887 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.02■□□□□ 0.16
XRCC1P18887 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.02■□□□□ 0.16
XRCC1P18887 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.02■□□□□ 0.16
XRCC1P18887 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
XRCC1P18887 AC098859.1-201ENST00000502915 1238 ntBASIC16.02■□□□□ 0.16
XRCC1P18887 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.02■□□□□ 0.16
XRCC1P18887 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
XRCC1P18887 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
XRCC1P18887 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
XRCC1P18887 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
XRCC1P18887 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
XRCC1P18887 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
XRCC1P18887 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
XRCC1P18887 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
XRCC1P18887 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
XRCC1P18887 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.02■□□□□ 0.15
XRCC1P18887 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.02■□□□□ 0.15
XRCC1P18887 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.02■□□□□ 0.15
XRCC1P18887 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
XRCC1P18887 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
XRCC1P18887 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
XRCC1P18887 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
XRCC1P18887 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
XRCC1P18887 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
XRCC1P18887 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
XRCC1P18887 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
XRCC1P18887 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
XRCC1P18887 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.01■□□□□ 0.15
XRCC1P18887 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
XRCC1P18887 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
XRCC1P18887 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
XRCC1P18887 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.01■□□□□ 0.15
XRCC1P18887 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
XRCC1P18887 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
XRCC1P18887 AC006449.6-201ENST00000612330 2296 ntBASIC16.01■□□□□ 0.15
XRCC1P18887 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.01■□□□□ 0.15
XRCC1P18887 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
XRCC1P18887 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
XRCC1P18887 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
XRCC1P18887 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
XRCC1P18887 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.01■□□□□ 0.15
XRCC1P18887 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.01■□□□□ 0.15
XRCC1P18887 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
XRCC1P18887 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
XRCC1P18887 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
XRCC1P18887 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.01■□□□□ 0.15
XRCC1P18887 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.01■□□□□ 0.15
XRCC1P18887 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.01■□□□□ 0.15
XRCC1P18887 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.01■□□□□ 0.15
XRCC1P18887 KLF2P3-201ENST00000451977 1087 ntBASIC16.01■□□□□ 0.15
XRCC1P18887 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
XRCC1P18887 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.01■□□□□ 0.15
XRCC1P18887 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
XRCC1P18887 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.01■□□□□ 0.15
XRCC1P18887 RARRES2P9-201ENST00000565168 469 ntBASIC16.01■□□□□ 0.15
XRCC1P18887 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.01■□□□□ 0.15
XRCC1P18887 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.01■□□□□ 0.15
XRCC1P18887 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.01■□□□□ 0.15
XRCC1P18887 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
XRCC1P18887 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
XRCC1P18887 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
XRCC1P18887 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
XRCC1P18887 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
XRCC1P18887 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.01■□□□□ 0.15
XRCC1P18887 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.01■□□□□ 0.15
XRCC1P18887 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
XRCC1P18887 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
XRCC1P18887 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
XRCC1P18887 AC099063.4-201ENST00000641099 1602 ntBASIC16.01■□□□□ 0.15
XRCC1P18887 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
XRCC1P18887 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms