Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.62■□□□□ 0.57
CDKL5O76039 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC18.62■□□□□ 0.57
CDKL5O76039 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDKL5O76039 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC18.62■□□□□ 0.57
CDKL5O76039 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CDKL5O76039 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 AP003680.1-201ENST00000598970 3660 ntBASIC18.61■□□□□ 0.57
CDKL5O76039 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC18.61■□□□□ 0.57
CDKL5O76039 AC046158.3-201ENST00000624947 2558 ntBASIC18.61■□□□□ 0.57
CDKL5O76039 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CDKL5O76039 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.61■□□□□ 0.57
CDKL5O76039 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CDKL5O76039 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 AL035456.1-201ENST00000456064 1369 ntBASIC18.61■□□□□ 0.57
CDKL5O76039 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.61■□□□□ 0.57
CDKL5O76039 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 SPDYE7P-202ENST00000420373 878 ntBASIC18.61■□□□□ 0.57
CDKL5O76039 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.61■□□□□ 0.57
CDKL5O76039 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.61■□□□□ 0.57
CDKL5O76039 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.61■□□□□ 0.57
CDKL5O76039 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
CDKL5O76039 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.61■□□□□ 0.57
CDKL5O76039 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.61■□□□□ 0.57
CDKL5O76039 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.61■□□□□ 0.57
CDKL5O76039 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 AP001059.3-201ENST00000619053 235 ntBASIC18.61■□□□□ 0.57
CDKL5O76039 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.61■□□□□ 0.57
CDKL5O76039 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CDKL5O76039 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.61■□□□□ 0.57
CDKL5O76039 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CDKL5O76039 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
CDKL5O76039 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDKL5O76039 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
CDKL5O76039 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CDKL5O76039 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDKL5O76039 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDKL5O76039 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDKL5O76039 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDKL5O76039 CICP6-201ENST00000457191 2729 ntBASIC18.6■□□□□ 0.57
CDKL5O76039 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.6■□□□□ 0.57
CDKL5O76039 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.6■□□□□ 0.57
CDKL5O76039 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDKL5O76039 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CDKL5O76039 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDKL5O76039 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDKL5O76039 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.6■□□□□ 0.57
CDKL5O76039 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC18.6■□□□□ 0.57
CDKL5O76039 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC18.6■□□□□ 0.57
CDKL5O76039 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDKL5O76039 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDKL5O76039 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CDKL5O76039 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.6■□□□□ 0.57
CDKL5O76039 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.6■□□□□ 0.57
CDKL5O76039 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.6■□□□□ 0.57
CDKL5O76039 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDKL5O76039 FUK-207ENST00000571514 3054 ntTSL 2 BASIC18.6■□□□□ 0.57
CDKL5O76039 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CDKL5O76039 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDKL5O76039 MIR1233-2-201ENST00000408138 82 ntBASIC18.6■□□□□ 0.57
CDKL5O76039 MIR1233-1-201ENST00000408722 82 ntBASIC18.6■□□□□ 0.57
CDKL5O76039 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CDKL5O76039 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.6■□□□□ 0.57
CDKL5O76039 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.6■□□□□ 0.57
CDKL5O76039 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.6■□□□□ 0.57
CDKL5O76039 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
CDKL5O76039 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.6■□□□□ 0.57
CDKL5O76039 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDKL5O76039 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.6■□□□□ 0.57
CDKL5O76039 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC18.6■□□□□ 0.57
CDKL5O76039 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDKL5O76039 AL450472.2-201ENST00000603663 1156 ntBASIC18.6■□□□□ 0.57
CDKL5O76039 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC18.6■□□□□ 0.57
CDKL5O76039 AC079781.4-201ENST00000641908 219 ntBASIC18.6■□□□□ 0.57
CDKL5O76039 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CDKL5O76039 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDKL5O76039 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CDKL5O76039 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDKL5O76039 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.6■□□□□ 0.57
CDKL5O76039 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18.6■□□□□ 0.57
CDKL5O76039 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC18.6■□□□□ 0.57
CDKL5O76039 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CDKL5O76039 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDKL5O76039 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CDKL5O76039 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.59■□□□□ 0.57
CDKL5O76039 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms