Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.06■□□□□ 0.16
SHOX2O60902 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
SHOX2O60902 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.06■□□□□ 0.16
SHOX2O60902 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.06■□□□□ 0.16
SHOX2O60902 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.06■□□□□ 0.16
SHOX2O60902 HOMER2P1-201ENST00000455653 964 ntBASIC16.06■□□□□ 0.16
SHOX2O60902 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.06■□□□□ 0.16
SHOX2O60902 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.06■□□□□ 0.16
SHOX2O60902 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.06■□□□□ 0.16
SHOX2O60902 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.06■□□□□ 0.16
SHOX2O60902 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.06■□□□□ 0.16
SHOX2O60902 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
SHOX2O60902 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 AC152010.1-201ENST00000415779 2006 ntBASIC16.06■□□□□ 0.16
SHOX2O60902 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHOX2O60902 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
SHOX2O60902 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.05■□□□□ 0.16
SHOX2O60902 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SHOX2O60902 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SHOX2O60902 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SHOX2O60902 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SHOX2O60902 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
SHOX2O60902 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SHOX2O60902 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
SHOX2O60902 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC16.05■□□□□ 0.16
SHOX2O60902 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.05■□□□□ 0.16
SHOX2O60902 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.05■□□□□ 0.16
SHOX2O60902 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.05■□□□□ 0.16
SHOX2O60902 AC083849.1-201ENST00000615227 514 ntBASIC16.05■□□□□ 0.16
SHOX2O60902 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.05■□□□□ 0.16
SHOX2O60902 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
SHOX2O60902 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC16.05■□□□□ 0.16
SHOX2O60902 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SHOX2O60902 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SHOX2O60902 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHOX2O60902 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC16.05■□□□□ 0.16
SHOX2O60902 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
SHOX2O60902 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
SHOX2O60902 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.04■□□□□ 0.16
SHOX2O60902 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
SHOX2O60902 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SHOX2O60902 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.04■□□□□ 0.16
SHOX2O60902 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
SHOX2O60902 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.04■□□□□ 0.16
SHOX2O60902 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.04■□□□□ 0.16
SHOX2O60902 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.04■□□□□ 0.16
SHOX2O60902 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
SHOX2O60902 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SHOX2O60902 AP000867.4-201ENST00000641616 219 ntBASIC16.04■□□□□ 0.16
SHOX2O60902 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.04■□□□□ 0.16
SHOX2O60902 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC16.04■□□□□ 0.16
SHOX2O60902 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
SHOX2O60902 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHOX2O60902 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms