Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC11O43248 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.23■□□□□ 0.19
HOXC11O43248 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
HOXC11O43248 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC11O43248 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC11O43248 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC11O43248 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC11O43248 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.23■□□□□ 0.19
HOXC11O43248 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
HOXC11O43248 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC11O43248 AC112492.5-201ENST00000421897 457 ntBASIC16.23■□□□□ 0.19
HOXC11O43248 TMEM14DP-201ENST00000422205 345 ntBASIC16.23■□□□□ 0.19
HOXC11O43248 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.23■□□□□ 0.19
HOXC11O43248 FAM86LP-201ENST00000478302 853 ntBASIC16.23■□□□□ 0.19
HOXC11O43248 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC11O43248 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC11O43248 RAB43P1-201ENST00000561790 589 ntBASIC16.23■□□□□ 0.19
HOXC11O43248 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.23■□□□□ 0.19
HOXC11O43248 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC11O43248 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.23■□□□□ 0.19
HOXC11O43248 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.23■□□□□ 0.19
HOXC11O43248 BRI3BPP1-201ENST00000594224 787 ntBASIC16.23■□□□□ 0.19
HOXC11O43248 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.23■□□□□ 0.19
HOXC11O43248 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.23■□□□□ 0.19
HOXC11O43248 AC017083.2-201ENST00000608069 979 ntBASIC16.23■□□□□ 0.19
HOXC11O43248 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.23■□□□□ 0.19
HOXC11O43248 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
HOXC11O43248 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC11O43248 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HOXC11O43248 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC11O43248 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC11O43248 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC11O43248 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HOXC11O43248 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.23■□□□□ 0.19
HOXC11O43248 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
HOXC11O43248 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.22■□□□□ 0.19
HOXC11O43248 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.22■□□□□ 0.19
HOXC11O43248 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
HOXC11O43248 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXC11O43248 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
HOXC11O43248 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
HOXC11O43248 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC16.22■□□□□ 0.19
HOXC11O43248 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.22■□□□□ 0.19
HOXC11O43248 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
HOXC11O43248 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.22■□□□□ 0.19
HOXC11O43248 KRT18P64-201ENST00000434946 1219 ntBASIC16.22■□□□□ 0.19
HOXC11O43248 AC007274.1-201ENST00000439805 662 ntBASIC16.22■□□□□ 0.19
HOXC11O43248 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.22■□□□□ 0.19
HOXC11O43248 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.22■□□□□ 0.19
HOXC11O43248 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXC11O43248 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.22■□□□□ 0.19
HOXC11O43248 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.22■□□□□ 0.19
HOXC11O43248 AC097359.3-201ENST00000603982 1210 ntBASIC16.22■□□□□ 0.19
HOXC11O43248 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.22■□□□□ 0.19
HOXC11O43248 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXC11O43248 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXC11O43248 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
HOXC11O43248 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
HOXC11O43248 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.22■□□□□ 0.19
HOXC11O43248 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXC11O43248 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC11O43248 LINC00554-201ENST00000564841 3011 ntBASIC16.21■□□□□ 0.19
HOXC11O43248 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC11O43248 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
HOXC11O43248 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.21■□□□□ 0.19
HOXC11O43248 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
HOXC11O43248 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
HOXC11O43248 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC11O43248 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.21■□□□□ 0.19
HOXC11O43248 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC11O43248 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.21■□□□□ 0.19
HOXC11O43248 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.21■□□□□ 0.19
HOXC11O43248 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC11O43248 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC11O43248 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC11O43248 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC11O43248 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC11O43248 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC16.21■□□□□ 0.19
HOXC11O43248 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC11O43248 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms