Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL20A1Q9P218 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL20A1Q9P218 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.98■□□□□ 0.47
COL20A1Q9P218 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 NSL1-201ENST00000366976 722 ntTSL 2 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 AC112492.5-201ENST00000421897 457 ntBASIC17.97■□□□□ 0.47
COL20A1Q9P218 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 PCDHB19P-201ENST00000570871 2371 ntBASIC17.97■□□□□ 0.47
COL20A1Q9P218 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL20A1Q9P218 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
COL20A1Q9P218 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL20A1Q9P218 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL20A1Q9P218 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL20A1Q9P218 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.96■□□□□ 0.47
COL20A1Q9P218 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
COL20A1Q9P218 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL20A1Q9P218 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.96■□□□□ 0.47
COL20A1Q9P218 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL20A1Q9P218 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL20A1Q9P218 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL20A1Q9P218 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC17.96■□□□□ 0.47
COL20A1Q9P218 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC17.96■□□□□ 0.47
COL20A1Q9P218 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.96■□□□□ 0.47
COL20A1Q9P218 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC17.96■□□□□ 0.47
COL20A1Q9P218 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC17.96■□□□□ 0.47
COL20A1Q9P218 AL359711.2-201ENST00000563105 872 ntBASIC17.96■□□□□ 0.47
COL20A1Q9P218 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
COL20A1Q9P218 AL008721.1-201ENST00000609964 604 ntBASIC17.96■□□□□ 0.47
COL20A1Q9P218 AL162274.1-201ENST00000617191 1098 ntBASIC17.96■□□□□ 0.47
COL20A1Q9P218 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL20A1Q9P218 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL20A1Q9P218 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL20A1Q9P218 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL20A1Q9P218 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL20A1Q9P218 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL20A1Q9P218 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.96■□□□□ 0.47
COL20A1Q9P218 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL20A1Q9P218 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL20A1Q9P218 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
COL20A1Q9P218 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL20A1Q9P218 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.96■□□□□ 0.46
COL20A1Q9P218 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
COL20A1Q9P218 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.96■□□□□ 0.46
COL20A1Q9P218 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL20A1Q9P218 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL20A1Q9P218 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL20A1Q9P218 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC17.95■□□□□ 0.46
COL20A1Q9P218 LINC02447-202ENST00000501888 2146 ntBASIC17.95■□□□□ 0.46
COL20A1Q9P218 RERG-209ENST00000546331 1383 ntTSL 2 BASIC17.95■□□□□ 0.46
COL20A1Q9P218 AC099398.1-201ENST00000567919 2776 ntBASIC17.95■□□□□ 0.46
COL20A1Q9P218 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL20A1Q9P218 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL20A1Q9P218 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL20A1Q9P218 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL20A1Q9P218 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC17.95■□□□□ 0.46
COL20A1Q9P218 AL442647.2-201ENST00000429864 857 ntBASIC17.95■□□□□ 0.46
COL20A1Q9P218 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms