Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 DBET-201ENST00000630918 3363 ntBASIC17.15■□□□□ 0.34
SIX2Q9NPC8 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 MYB-201ENST00000316528 3571 ntTSL 5 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 MYB-241ENST00000616088 3573 ntTSL 5 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 AC138035.3-201ENST00000622706 2791 ntBASIC17.15■□□□□ 0.34
SIX2Q9NPC8 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SIX2Q9NPC8 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
SIX2Q9NPC8 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
SIX2Q9NPC8 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
SIX2Q9NPC8 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 SPDYE17-201ENST00000412399 783 ntBASIC17.14■□□□□ 0.33
SIX2Q9NPC8 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 MIR3687-2-201ENST00000577708 61 ntBASIC17.14■□□□□ 0.33
SIX2Q9NPC8 AC004835.2-201ENST00000603762 682 ntBASIC17.14■□□□□ 0.33
SIX2Q9NPC8 MIR3687-1-201ENST00000614492 61 ntBASIC17.14■□□□□ 0.33
SIX2Q9NPC8 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SIX2Q9NPC8 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 AC023157.3-201ENST00000619086 2088 ntBASIC17.13■□□□□ 0.33
SIX2Q9NPC8 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 AC136604.1-201ENST00000418535 575 ntBASIC17.13■□□□□ 0.33
SIX2Q9NPC8 AL353705.2-201ENST00000428243 662 ntBASIC17.13■□□□□ 0.33
SIX2Q9NPC8 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.13■□□□□ 0.33
SIX2Q9NPC8 AC007967.4-201ENST00000614700 386 ntBASIC17.13■□□□□ 0.33
SIX2Q9NPC8 AL607033.1-201ENST00000623900 1599 ntBASIC17.13■□□□□ 0.33
SIX2Q9NPC8 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms