Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HMGB4Q8WW32 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 AC124067.4-201ENST00000519691 2379 ntBASIC16.02■□□□□ 0.16
HMGB4Q8WW32 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 RPF1-202ENST00000370656 724 ntTSL 2 BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 AL442647.2-201ENST00000429864 857 ntBASIC16.02■□□□□ 0.16
HMGB4Q8WW32 RPL13P2-201ENST00000440687 659 ntBASIC16.02■□□□□ 0.16
HMGB4Q8WW32 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 SLC25A47P1-201ENST00000531577 414 ntBASIC16.02■□□□□ 0.16
HMGB4Q8WW32 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 AL391069.4-201ENST00000609583 481 ntBASIC16.02■□□□□ 0.16
HMGB4Q8WW32 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.02■□□□□ 0.16
HMGB4Q8WW32 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.02■□□□□ 0.16
HMGB4Q8WW32 AL592424.1-201ENST00000563624 1536 ntBASIC16.02■□□□□ 0.15
HMGB4Q8WW32 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.02■□□□□ 0.15
HMGB4Q8WW32 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
HMGB4Q8WW32 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB4Q8WW32 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB4Q8WW32 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB4Q8WW32 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
HMGB4Q8WW32 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB4Q8WW32 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB4Q8WW32 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB4Q8WW32 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB4Q8WW32 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB4Q8WW32 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
HMGB4Q8WW32 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 EEF1DP4-201ENST00000446006 880 ntBASIC16.01■□□□□ 0.15
HMGB4Q8WW32 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 AC245100.5-201ENST00000452108 331 ntBASIC16.01■□□□□ 0.15
HMGB4Q8WW32 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 FAM86LP-201ENST00000478302 853 ntBASIC16.01■□□□□ 0.15
HMGB4Q8WW32 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 TDH-203ENST00000531764 1110 ntBASIC16.01■□□□□ 0.15
HMGB4Q8WW32 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HMGB4Q8WW32 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms