Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 AP002414.3-201ENST00000589352 1468 ntBASIC15.04■□□□□ -0
DEPDC4Q8N2C3 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 CYB561-217ENST00000582997 877 ntTSL 5 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 AC004706.3-202ENST00000621574 984 ntBASIC15.04■□□□□ -0
DEPDC4Q8N2C3 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.04■□□□□ -0
DEPDC4Q8N2C3 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 MED15P5-201ENST00000423150 992 ntBASIC15.03■□□□□ -0
DEPDC4Q8N2C3 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 RNA5SP416-201ENST00000516838 111 ntBASIC15.03■□□□□ -0
DEPDC4Q8N2C3 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 UNC93B6-202ENST00000528242 690 ntBASIC15.03■□□□□ -0
DEPDC4Q8N2C3 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 FAM197Y3-203ENST00000618346 717 ntBASIC15.03■□□□□ -0
DEPDC4Q8N2C3 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 AC131009.4-201ENST00000624048 1740 ntBASIC15.03■□□□□ -0
DEPDC4Q8N2C3 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 TMBIM7P-203ENST00000641617 1718 ntBASIC15.03■□□□□ -0
DEPDC4Q8N2C3 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.03■□□□□ -0
DEPDC4Q8N2C3 SSR4P1-203ENST00000599569 2260 ntBASIC15.03■□□□□ -0
DEPDC4Q8N2C3 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC15.02■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms