Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC19.77■□□□□ 0.76
SYNE4Q8N205 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC19.77■□□□□ 0.76
SYNE4Q8N205 GPX4-206ENST00000588919 803 ntTSL 2 BASIC19.77■□□□□ 0.76
SYNE4Q8N205 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SYNE4Q8N205 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SYNE4Q8N205 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC19.77■□□□□ 0.75
SYNE4Q8N205 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
SYNE4Q8N205 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
SYNE4Q8N205 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
SYNE4Q8N205 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE4Q8N205 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE4Q8N205 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE4Q8N205 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE4Q8N205 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE4Q8N205 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE4Q8N205 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE4Q8N205 MGST3-203ENST00000367885 680 ntTSL 2 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE4Q8N205 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE4Q8N205 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE4Q8N205 BCYRN1-201ENST00000418539 200 ntBASIC19.76■□□□□ 0.75
SYNE4Q8N205 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 CLUHP6-201ENST00000580789 941 ntBASIC19.76■□□□□ 0.75
SYNE4Q8N205 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE4Q8N205 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE4Q8N205 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE4Q8N205 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SYNE4Q8N205 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE4Q8N205 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SYNE4Q8N205 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC19.75■□□□□ 0.75
SYNE4Q8N205 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE4Q8N205 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE4Q8N205 LINC02199-201ENST00000506655 2702 ntBASIC19.75■□□□□ 0.75
SYNE4Q8N205 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE4Q8N205 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE4Q8N205 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE4Q8N205 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC19.75■□□□□ 0.75
SYNE4Q8N205 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE4Q8N205 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE4Q8N205 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
SYNE4Q8N205 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE4Q8N205 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE4Q8N205 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC19.75■□□□□ 0.75
SYNE4Q8N205 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC19.75■□□□□ 0.75
SYNE4Q8N205 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC19.75■□□□□ 0.75
SYNE4Q8N205 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC19.75■□□□□ 0.75
SYNE4Q8N205 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC19.75■□□□□ 0.75
SYNE4Q8N205 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC19.75■□□□□ 0.75
SYNE4Q8N205 AL049840.4-201ENST00000602422 811 ntBASIC19.75■□□□□ 0.75
SYNE4Q8N205 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC19.75■□□□□ 0.75
SYNE4Q8N205 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC19.75■□□□□ 0.75
SYNE4Q8N205 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE4Q8N205 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.75■□□□□ 0.75
SYNE4Q8N205 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE4Q8N205 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE4Q8N205 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.75■□□□□ 0.75
SYNE4Q8N205 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE4Q8N205 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.75■□□□□ 0.75
SYNE4Q8N205 INTS4P2-202ENST00000614726 2019 ntBASIC19.75■□□□□ 0.75
SYNE4Q8N205 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SYNE4Q8N205 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.74■□□□□ 0.75
SYNE4Q8N205 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
SYNE4Q8N205 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC19.74■□□□□ 0.75
SYNE4Q8N205 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SYNE4Q8N205 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
SYNE4Q8N205 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
SYNE4Q8N205 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.74■□□□□ 0.75
SYNE4Q8N205 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SYNE4Q8N205 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SYNE4Q8N205 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC19.74■□□□□ 0.75
SYNE4Q8N205 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
SYNE4Q8N205 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SYNE4Q8N205 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SYNE4Q8N205 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SYNE4Q8N205 AC092933.1-201ENST00000393644 945 ntBASIC19.74■□□□□ 0.75
SYNE4Q8N205 BRWD1P1-201ENST00000401091 371 ntBASIC19.74■□□□□ 0.75
SYNE4Q8N205 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC19.74■□□□□ 0.75
SYNE4Q8N205 AC134915.1-201ENST00000426461 574 ntBASIC19.74■□□□□ 0.75
SYNE4Q8N205 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC19.74■□□□□ 0.75
SYNE4Q8N205 AL162726.2-201ENST00000438986 1017 ntBASIC19.74■□□□□ 0.75
SYNE4Q8N205 CSF2RBP1-201ENST00000447905 391 ntBASIC19.74■□□□□ 0.75
SYNE4Q8N205 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC19.74■□□□□ 0.75
SYNE4Q8N205 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SYNE4Q8N205 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC19.74■□□□□ 0.75
SYNE4Q8N205 AP001889.1-201ENST00000525414 633 ntBASIC19.74■□□□□ 0.75
SYNE4Q8N205 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms